BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926203
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69100.1 | Symbols: | Eukaryotic aspartyl protease family p... 416 1e-115
> AT1G69100.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:25979999-25981436 FORWARD LENGTH=1104
Length=1104
Score = 416 bits (225), Expect = 1e-115
Identities = 429/521 (82%), Gaps = 39/521 (7%)
Strand=Plus/Plus
Query 271 GTGTTAAATTTGATGGTG-TACTTGTGTTGGGCATCAAATCTTCATTTGCGCCAGGATCT 329
|||||||||||||||| | || ||| ||||||||||||||||||| ||||| |||||||
Sbjct 440 GTGTTAAATTTGATGGAGTTA-TTGGGTTGGGCATCAAATCTTCACGTGCGCAAGGATCT 498
Query 330 GTCACGATTTTGGAAAACATGGTGAAACAAAAATTGATAACTAAACCCATTTTCTCGTTT 389
|||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 499 GTCACGGTTTGGGAAAACATGGTGAAACAAAAGTTGATAACTAAACCTATTTTCTC-TTT 557
Query 390 -TGGCTGAGGTCGTACAAGGGAGATGGGAAGGGCGAAGATCCTAACGGTGGCCAGAT-AG 447
| ||||| | ||||||||||| || | || |||||||| || ||||||||||| |
Sbjct 558 ATATTTGAGGCCACACAAGGGAGAT-GG-A-GGAGAAGATCCAAATGGTGGCCAGATCA- 613
Query 448 TGTTTGGTGGGTTTGACCCCAAACACTTCCACGGAGAACATGCCTATGT-----T---TC 499
||||||||||||||||||| || || ||| | |||||||||| ||||| | |
Sbjct 614 TGTTTGGTGGGTTTGACCCGAAGCAGTTCAAGGGAGAACATGTTTATGTACCGATGAAAC 673
Query 500 -AAGCGACGACCGCTGGAAGATCAAAATGTCCAAAATATACAACAATGGTAAACCAG-GA 557
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct 674 TAAGCGACGACCGCTGGAAGATCAAAATGTCCAAAATTTACATTAATGGTAAACCAGCGA 733
Query 558 ACAAATCTTTGTGA--CT-TACAATGCAAAGCAATCGTTGACTCGGGAACAACCGACATT 614
||| | ||||||| | || |||||| |||||| |||||||| ||| | || ||||||
Sbjct 734 TCAACT-TTTGTGATGATGTAGAATGCACAGCAATGGTTGACTCTGGATCGACTGACATT 792
Query 615 TCTGGCCC---CG-AGCTGTCCGTAAGATCTATAGATGAAGCAATTGGAGC-A-CATAGA 668
| |||||| | ||||||| |||| |||||| | ||| ||||||||| | || | |
Sbjct 793 TTTGGCCCGGATGAAGCTGTCGGTAAAATCTAT--A--AAGAAATTGGAGCAACCA-A-A 846
Query 669 GTAACAATTAAATGCGATAAGGTTCCTGCTTTGCCGGATATCTACTTCGAAATTGGAGGA 728
|||| ||||| |||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 847 GTAATAATTAGATGCGAGCAGTTTCCTGCTTTGCCGGATATCTACTTCGAAATTGGAGGA 906
Query 729 AAA-AGTTCTTCGCCTCACTAAAGATGATGTACGATCAGGT 768
||| | | || |||||||||||| ||||| |||| | ||||
Sbjct 907 AAACA-T-CTACGCCTCACTAAACATGAT-TACGTTGAGGT 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5