BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926207 Length=427 Score E Sequences producing significant alignments: (Bits) Value AT3G43890.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 311 4e-84 AT1G69150.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 54.7 7e-07 > AT3G43890.1 | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr3:15741468-15743453 REVERSE LENGTH=1986 Length=1986 Score = 311 bits (168), Expect = 4e-84 Identities = 272/322 (84%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 77 TTTGAAGATAAACTTACCGTTCCACGAGCATCCATTAACGCCTGTGAAAATAGAGTCGAA 136 ||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 9 TTTGAAGGTTAACCTACCGTTCCACGAGCATCCATTAACGCCTGTGAAAATGGAGTCGAA 68 Query 137 GTGTGATTGGTGCGGACTCAAATTCAAAGGTGTAACTGATGGCTAC-AAGTGCGACTCAT 195 |||||||||||| ||| ||||||||| | || ||||||||||| || || || || | Sbjct 69 GTGTGATTGGTGTGGAATCAAATTCATACACATATCTGATGGCTACCAA-TGTGATTCCT 127 Query 196 GTGTTTT-TGGTTTATTCCACAAGACATGCGCCAACAATGAGAATATCCCCCACCCTTCT 254 || || | ||||||||||||||||||||||||| || |||||||| ||||||||||| Sbjct 128 GT-TTCACTCCTTTATTCCACAAGACATGCGCCAACGATAAGAATATCGCCCACCCTTCT 186 Query 255 CAAACGTGTGGCAACATTCTATATCATACTTTCAATTTCT-ATAGCGGCGAGAGGAGATG 313 ||| ||||||||| |||||| |||||||| | ||||| | |||||||| || ||||||| Sbjct 187 CAAGCGTGTGGCATCATTCTTTATCATACAGTGAATTT-TGATAGCGGCAAGTGGAGATG 245 Query 314 TGCAGGATGTAGAGAGAAGATCTACGATAGCTATATTTTTA-TATGTAACGATTGTGTTT 372 |||| |||| |||| |||||||||||| || ||||||| |||||||||| ||||||| Sbjct 246 TGCAAAATGTGGAGAAAAGATCTACGATTCCT-TATTTTTTGTATGTAACGACTGTGTTT 304 Query 373 TGGTACCTACAAGAAAAGGAAG 394 | ||||| |||||||||||| Sbjct 305 TAAAACCTAGAAGAAAAGGAAG 326 > AT1G69150.1 | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr1:25993659-25995212 REVERSE LENGTH=1554 Length=1554 Score = 54.7 bits (29), Expect = 7e-07 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 399 GGTCATTGATGTTCCTCAGCACCATGACC 427 ||||||||||||||||||||||||||||| Sbjct 264 GGTCATTGATGTTCCTCAGCACCATGACC 292 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20257902847 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5