BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926207

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G43890.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   311    4e-84
  AT1G69150.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...  54.7    7e-07


> AT3G43890.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr3:15741468-15743453 REVERSE LENGTH=1986
Length=1986

 Score =  311 bits (168),  Expect = 4e-84
 Identities = 272/322 (84%), Gaps = 8/322 (2%)
 Strand=Plus/Plus

Query  77   TTTGAAGATAAACTTACCGTTCCACGAGCATCCATTAACGCCTGTGAAAATAGAGTCGAA  136
            ||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  9    TTTGAAGGTTAACCTACCGTTCCACGAGCATCCATTAACGCCTGTGAAAATGGAGTCGAA  68

Query  137  GTGTGATTGGTGCGGACTCAAATTCAAAGGTGTAACTGATGGCTAC-AAGTGCGACTCAT  195
            |||||||||||| ||| ||||||||| |    || ||||||||||| || || || || |
Sbjct  69   GTGTGATTGGTGTGGAATCAAATTCATACACATATCTGATGGCTACCAA-TGTGATTCCT  127

Query  196  GTGTTTT-TGGTTTATTCCACAAGACATGCGCCAACAATGAGAATATCCCCCACCCTTCT  254
            || ||   |  ||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct  128  GT-TTCACTCCTTTATTCCACAAGACATGCGCCAACGATAAGAATATCGCCCACCCTTCT  186

Query  255  CAAACGTGTGGCAACATTCTATATCATACTTTCAATTTCT-ATAGCGGCGAGAGGAGATG  313
            ||| ||||||||| |||||| ||||||||  | ||||| | |||||||| || |||||||
Sbjct  187  CAAGCGTGTGGCATCATTCTTTATCATACAGTGAATTT-TGATAGCGGCAAGTGGAGATG  245

Query  314  TGCAGGATGTAGAGAGAAGATCTACGATAGCTATATTTTTA-TATGTAACGATTGTGTTT  372
            ||||  |||| |||| ||||||||||||  || |||||||  |||||||||| |||||||
Sbjct  246  TGCAAAATGTGGAGAAAAGATCTACGATTCCT-TATTTTTTGTATGTAACGACTGTGTTT  304

Query  373  TGGTACCTACAAGAAAAGGAAG  394
            |   ||||| ||||||||||||
Sbjct  305  TAAAACCTAGAAGAAAAGGAAG  326


> AT1G69150.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr1:25993659-25995212 REVERSE LENGTH=1554
Length=1554

 Score = 54.7 bits (29),  Expect = 7e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  399  GGTCATTGATGTTCCTCAGCACCATGACC  427
            |||||||||||||||||||||||||||||
Sbjct  264  GGTCATTGATGTTCCTCAGCACCATGACC  292



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20257902847


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5