BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926218
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69250.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 1371 0.0
> AT1G69250.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr1:26032827-26035504 FORWARD LENGTH=1715
Length=1715
Score = 1371 bits (742), Expect = 0.0
Identities = 1141/1322 (86%), Gaps = 74/1322 (6%)
Strand=Plus/Plus
Query 5 CAGTACGTGTGCAGATATGGCTACCGAGGGAGTTGTTCCTTCAGCGAAGGCGATTTCTGC 64
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 213 CAGTACGTGTGCAGATATGGCTACCGAGGGAGTTGTTCCTTCAGCGCAGGATATTGCTGC 272
Query 65 TGCCTTTGTGGA-ACAGTACTATTATGTTTTAAGATATG-TTCCTCATGAAGCTCATAAG 122
|| ||||| || |||||||||| |||||||| || | | ||||||||||||||| || |
Sbjct 273 TGAATTTGT-GAGACAGTACTATCATGTTTTAGGACA-GCTTCCTCATGAAGCTCGTAGG 330
Query 123 TTATATGTTGCTGATAGTGTTTTCAGCAGACCTAG-TCCTGA-TGGTACTATGCTGTCTT 180
|||||||||| || ||||||| ||||||||||| | | | | |||||||||| ||||||
Sbjct 331 TTATATGTTGATGCTAGTGTTGTCAGCAGACCT-GAT-GTTACTGGTACTATGATGTCTT 388
Query 181 TTACTTCCGTTGAGGCTATCAACGAGCATATCCTTTCATGTGGCTTTGAGAATACGACAT 240
||||||||||||||||||||||| |||||||||| || |||| |||||||||||| | ||
Sbjct 389 TTACTTCCGTTGAGGCTATCAACAAGCATATCCTGTCCTGTGACTTTGAGAATACTAAAT 448
Query 241 TTGAGGTTCTGAGTATCGATTCTCAGAATTCTTTGGATGATGGGATAATTATCATGGTTA 300
|||||||||||||| | || ||||||||||||||||| |||||||| |||| ||||| |
Sbjct 449 TTGAGGTTCTGAGTGTTGACTCTCAGAATTCTTTGGAAGATGGGATTTTTATTATGGTGA 508
Query 301 TTGGTTTCATGACTGGAAAAGACAACCTGAGGAGGAAGTTTTCTCAGATATTCTAT-TTG 359
| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 509 TCGGTTTCATGACTGGAAAAGACAACCAGAGGAGGAAGTTTTCTCAGATGTTCTATCTT- 567
Query 360 GCACGTCATAAGA-ACCAT-GTTGTCCTCAATGACATGTTTCGATATGTTGATCAAGATG 417
|| ||||| || | ||| | ||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 568 GCTCGTCA-AA-ATACCCTCGTTGTTCTCAATGACATGTTACGATACGTTGATCAAGAGG 625
Query 418 ATTCCACCCCACAAACTCTGCCAGTTGTTGAATGTGAGCCAGCAACTGAGATTGTGAAG- 476
||| | | || | ||| | | ||||||||| | ||||||||||||| ||
Sbjct 626 ATT-C-TTCTAC---CACTG--A--AACTCCATGTGAGCCGGTAACTGAGATTGTG-AGA 675
Query 477 CCAGCTGCTGAG-CT----AA-----AGAAGACCGAGCTGAAACAGAAAAACGATGCTTC 526
||||||| || | || || ||||||| ||||||||||||||||||| ||||||
Sbjct 676 CCAGCTGATG-GTCTAAAGAAGGCCGAGAAGACTGAGCTGAAACAGAAAAACGTTGCTTC 734
Query 527 GGTGGCCAAGTCTGTTAATGCTGCTGTTGAAAAGAATGCTGCTGCTCCATTGGACAATGG 586
||||| || |||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 735 GGTGGAGAAATCTGTTAATGCTGCTGTTGAAAAGAA---TGCTGCTCCATTGGACAACGG 791
Query 587 AAAGATGAAGCAGTCTGAAAAAGCTGTTATTGCTCAAAAACCAACAGAGCAAGTTGCTGA 646
|||||||||||| |||||||||||||||||| |||| ||| ||||||| | | ||
Sbjct 792 AAAGATGAAGCAATCTGAAAAAGCTGTTATTACTCAGAAAGTTACAGAGCCA---GATG- 847
Query 647 AACAGTTGCTCCTCAACCTGATGGAGCCAAGAGATCGTTTGCTG-CGATAGTTCAATCAA 705
| ||||||||| || ||||||||||||||||||||||||| | |||||| |||||
Sbjct 848 --C---TGCTCCTCAGCCCGATGGAGCCAAGAGATCGTTTGCTGAC-ATAGTTGGATCAA 901
Query 706 TGGC-AAACAACGCTGCTCCGTTTCAAG----------TG--AAAGCCCCGGTTCAGCAA 752
|||| ||| ||||||||||||||||||| || |||||||||||||| ||
Sbjct 902 TGGCGAAA-AACGCTGCTCCGTTTCAAGTTAAATCCCCTGTTCAAGCCCCGGTTCAGAAA 960
Query 753 CCTAAATACATGGGACAACCACGTGCTGCTGCAGCACCTAAAAAACCTGCTTACGTCAGT 812
||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 961 CCTAAATACGTGGGACAACCCCGTGCTGCTGCAGCACCTCAAAAACCTGCTTACGTCAGT 1020
Query 813 AAATCTATAAAGAAAAATGATCAGAAGATCATTGAAGAACCAGGCAAATCTATATTTGTG 872
||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||
Sbjct 1021 AAATCTATAAAGAAAAATGATCAGAAGGTCATTGAAGTACCAGGCACTTCGATATTTGTT 1080
Query 873 GCAAATCTGCCATTGAATGCAATGCCGCCCCAACTCTATGAACTGTTCAAGGATTTTGGT 932
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1081 GCAAATCTGCCATTGAATGCAATGCCGCCTCAACTCTTTGAACTGTTCAAGGATTTTGGT 1140
Query 933 CCTATCAAAGAAAACGGGATTCAAGTCCGAAGCTCCAGGGGCAATGCTAATCCAGTTTGC 992
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1141 CCTATCAAAGAAAACGGGATTCAAGTCCGAAGCTCCAGGGGTAATGCTAATCCAGTTTGC 1200
Query 993 TTCGGGTTTAT-TGCCTTTGAATCTGCTGCCTCTGTCCAGAGCGTGCTTCAGGCTACCAA 1051
||||||||||| | |||||||| ||| |||||| ||||||||||||||||||||| ||||
Sbjct 1201 TTCGGGTTTATCT-CCTTTGAAACTGTTGCCTCAGTCCAGAGCGTGCTTCAGGCTGCCAA 1259
Query 1052 GAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAGGAGAAGGAAGTTGACTA 1111
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1260 GAACACGCCCTTCATGCTTGCAGACCGTAAGCTTCGTGTAAAGGAAAAAGAAGTTGATTA 1319
Query 1112 TGATGGAAGCAAACCTTCTGGGAAAACCAAAGGTGGAAGCAACAAGATTCAAAATGGCTC 1171
||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 1320 TGATGGAAGCAAACCTTCTGGTAAAACCAAAGGTGGAAGCAACAAGACGCAGAATGGCTC 1379
Query 1172 TGCAGATGGCAGCAAGACTGAGAATAGCTCTACAGATGACAGCAAGACACAAAACGGCTC 1231
||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 1380 TGCAGATAGCAGCAAGACTGAGAATGGCTCTGCAGATGACAGCAAGACA-AAT--GGCTC 1436
Query 1232 AGCAGAAGATGGCGA-AGATGAGTTCAAGCAGGTCAGAAAC-CGTAGGAATAGTAGAAAA 1289
|||||||||||||| | | || ||||| ||||| | ||| ||||| ||||| | ||||
Sbjct 1437 CGCAGAAGATGGCGAGAAA-GAATTCAAACAGGTTA-AAAGTCGTAGAAATAGGA-AAAA 1493
Query 1290 AA 1291
||
Sbjct 1494 AA 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5