BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926223
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69295.1 | Symbols: PDCB4 | plasmodesmata callose-binding pr... 933 0.0
> AT1G69295.1 | Symbols: PDCB4 | plasmodesmata callose-binding
protein 4 | chr1:26050197-26052567 REVERSE LENGTH=1688
Length=1688
Score = 933 bits (505), Expect = 0.0
Identities = 659/730 (90%), Gaps = 24/730 (3%)
Strand=Plus/Plus
Query 1 TCTCTCTGAACT-ACACAATCATGTCGGTTTTACTTCCTCTCTGTCTGATTATCTCCATG 59
||||| |||| | || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TCTCTTTGAA-TCACTCAGTCATGTCGGTTTTACTTCCTCTCTGTCTGATTATCTCCATG 763
Query 60 TTCACATACTCAAACGCAGTGTATTGTGTGTGCAAAGATGGGAACGAGCAAGTTCTTCAG 119
||||| || |||||||||| ||||||| | |||||||| |||||||||||||| ||||||
Sbjct 764 TTCACCTATTCAAACGCAGCGTATTGTCTTTGCAAAGAGGGGAACGAGCAAGTGCTTCAG 823
Query 120 AAGGCAATAGACTACGCTTGTGGAAACGGAGCTGACTGTAGTCAGATCCAGAC--ATCCG 177
|||||||||||||||||||||||||| ||||||||||||| |||||||| || | |||
Sbjct 824 AAGGCAATAGACTACGCTTGTGGAAATGGAGCTGACTGTACCCAGATCCA-ACCCA-CCG 881
Query 178 GAGCTTGTTTCCAACCTAACACCGTCAAAAGCCACTGTGACGTCGCCGTCAACAGTTACT 237
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 882 GAGCTTGTTACCAACCTAACACCGTCAAAAACCACTGTGACGTCGCCGTCAACAGTTACT 941
Query 238 ACCAGAAGAAAGCTTCTTCCGGTGCCACCTGTGACTTTAACGGCGCCGCCACCCCCTCTA 297
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 942 ACCAGAAAAAAGCTTCTTCCGGTGCCACCTGTGACTTTAACGGCGCCGCCTCCCCCTCTA 1001
Query 298 ATACCCTTCCTTCAACTGCTTCAAGCTGTTTAACTGGTTCAAGCTCTAGTGGCACTCCTA 357
||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1002 CTACCCCTCCGTCAACTGCTTCAAACTGTTTAACTGGTTCAAGCTCTAGTGGCACTCCTA 1061
Query 358 CCACAGGAACCCCAACTAGTGGGACCCCAACTACCGGAACTCCAACCACTGGAACCCCCA 417
|||||||||| ||||||| |||||| | | | ||| | | ||| ||||| |
Sbjct 1062 CCACAGGAACACCAACTACTGGGAC---A-C--C---AAC-C-AG----TGGGACCCCGA 1106
Query 418 CCACCGGAACTCCGACTACTGGGACCCCCACCACCGGAACTCCGACAAGTGGGACCCCAA 477
| |||||||||||||| || || ||||||||||| |||||||| || |||||||| ||||
Sbjct 1107 CTACCGGAACTCCGACCACCGGAACCCCCACCACTGGAACTCCAACCAGTGGGACTCCAA 1166
Query 478 CTAGTGGCTTCCCAACTACCGGGACTCCGAACACAGGGACTAACACTGGGATGCCAAATT 537
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1167 CTAGTGGCTTCCCAAATACCGGGACTCCAAACACAGGGACTAACACTGGGATGCCAAATT 1226
Query 538 CCGGCGGGATGCCAACTTCATCGTCATCTTCGGTGTTCCCGGGCACTACTCTTGGACCGA 597
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1227 CCAACGGGATGCCAACTTCATCGTCATCTTCGGTGTTCCCGGGGACTACTCTTGGCCCGA 1286
Query 598 CTGGTAGCGGGGGACTAGGTGATCCAAATGCTGGAGAGAAGCTGTCTGTCCGAACTAACA 657
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1287 CTGGGAGCGGGGGACTAGGCGATCCAAATGCTGGAGAGAAGCTGTCTGTTCGAACTAACA 1346
Query 658 CGGTGGTCTTCTTATTATCCGGTGTAGCT--A-TGCTTGTCATATGAGGGCTTAGAAGTC 714
| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 1347 CAGTGGTCTTCTTATTAACCGGTGTAGCAGCAATGCTTGTCATATGAGGGCTTAGAAGTC 1406
Query 715 ACACGAGGTT 724
||||| ||||
Sbjct 1407 ACACGCGGTT 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5