BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926231 Length=1002 Score E Sequences producing significant alignments: (Bits) Value AT1G69370.1 | Symbols: CM3, cm-3 | chorismate mutase 3 | chr1:2... 1509 0.0 > AT1G69370.1 | Symbols: CM3, cm-3 | chorismate mutase 3 | chr1:26079956-26081727 FORWARD LENGTH=1261 Length=1261 Score = 1509 bits (817), Expect = 0.0 Identities = 948/1008 (94%), Gaps = 22/1008 (2%) Strand=Plus/Plus Query 2 TCTT-CTCTTTTGATTCTCCGATGGAGGCTAAGCTACTCAAACCCGCGTTTTCCAATTCC 60 |||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 122 TCTTCCTCTTTTGATTCTCCGATGGAGGCTAAGTTACTCAAACCCGCGTTTTACAATTCC 181 Query 61 CCAAGCCTCAATCTCGCGAATTCTTCAAAACCCATCTCGCAAGTATCAATCTTGAACGGT 120 |||| ||||||||| |||||||||||| || |||||||| | ||||||||| ||||| | Sbjct 182 CCAAACCTCAATCTTACGAATTCTTCAAGACTCATCTCGCGATTATCAATCTGGAACGAT 241 Query 121 AAATC-GAGGTTTGGACTA---TCTGGGTCTCT-TTCCCTCCGTCTCTCCGCAGCTTCTC 175 ||||| | | |||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 242 AAATCAAAAG-TTGGACTATCTTCTGGGTCTCTCTT-CCTCCGTCTCTCCGCAGCTTCTC 299 Query 176 CGATCCGATACTCTAGGGGGCTACTACGGGTTGATGAGAGTGAGTATTTGACACTTGACA 235 |||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| | Sbjct 300 CGATCCGATACTCTAGGGGGCTACTAAGGGTAGATGAGAGTGAGTATTTGAAACTTGAAA 359 Query 236 GCATTAGACACTCTTTGATTCGTCAAGAGGACAGTATTATCTTTAATCTTCTTGAACGAG 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GCATTAGACACTCTTTGATTCGTCAAGAGGACAGTATTATCTTTAATCTTCTTGAACGAG 419 Query 296 CTCAGTATCGCTACAACGCTGATACGTATGACGAGGATGCCTTTACTATGGAAGGTTTTC 355 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 420 CTCAGTATCGCTACAACGCTGATACTTATGACGAGGATGCCTTTACTATGGAAGGGTTTC 479 Query 356 AAGGATCTTTGGTTGAGTTTATGGTCAGAGAAACTGAAAAGCTTCACGCAAAGGTGGACA 415 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AAGGATCTTTAGTTGAGTTTATGGTCAGAGAAACTGAAAAGCTTCACGCAAAGGTGGACA 539 Query 416 GGTACAAGAGTCCTGATGAGCATCCCTTTTTCCCACAATGCTTGCCTGAGCCTATTCTTC 475 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 540 GGTACAAGAGTCCTGATGAGCATCCCTTTTTCCCACAATGCTTGCCTGAACCTATCCTTC 599 Query 476 CTCCGATTCAATACCCACAGGTTTTGCATCATTGCGCCGAATTGATAAACATCAACAAGA 535 |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 600 CTCCTATTCAATACCCACAGGTTTTGCATCGTTGCGCCGAATCGATAAACATCAACAAGA 659 Query 536 AGGTGTGGAATATGTATTTCAAGCACCTTCTTCCTAGACTGGTCAAGCCAGGGGATGACG 595 |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| Sbjct 660 AGGTGTGGAATATGTATTTCAAACACCTTCTCCCCAGACTGGTCAAGCCAGGGGATGACG 719 Query 596 GTAATTGTGGCTCAGCTGCTCTCTGTGACACAATGTGTTTGCAGGCAAGAAGCTTGATAC 655 |||||||||| ||||||||||||||||||||||||||||||||| | | | | Sbjct 720 GTAATTGTGGTTCAGCTGCTCTCTGTGACACAATGTGTTTGCAG--A------T--A--C 767 Query 656 TTTCAAAGAGAATTCACTTTGGTAAATTTGTTGCTGAGGCCAAGTTTCGTGAAAATCCTG 715 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 768 TTTCAAAGAGAATTCACTTTGGTAAATTTGTTGCTGAAGCCAAGTTTCGTGAAAATCCTG 827 Query 716 CTGCCTATGAAACAGCTATCCGAGAACAAGACCGGACACAGCTGATGCGACTTCTAACGT 775 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 828 CTGCCTATGAAACAGCTATCAAAGAACAAGACCGGACACAGCTGATGCAACTTCTAACGT 887 Query 776 ATGAAACGGTTGAAGAAGTAGTCAAGAAGAGAGTTGAGATCAAAGCCAGAATTTTCGGTC 835 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 888 ACGAAACGGTTGAAGAAGTAGTCAAGAAGAGAGTTGAGATCAAAGCCAGAATTTTTGGTC 947 Query 836 AAGACATAACGATCAACGACCCAGAAACTGGAGCTGATCCTTCCTACAAAATTA-AACCT 894 ||||||||||||| |||||||||||||||| ||||||||||||||||||||| | ||||| Sbjct 948 AAGACATAACGATTAACGACCCAGAAACTGAAGCTGATCCTTCCTACAAAAT-ACAACCT 1006 Query 895 AGCTTAGTTGCAAAACTCTATGGAGAAAGGATCATGCCCCTCACAAAGGAAGTCCAAATT 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 AGCTTAGTTGCAAAACTCTATGGAGAAAGGATCATGCCCCTCACAAAGGAAGTCCAAATT 1066 Query 955 GAGTACTTGCTTAGAAGGCTGGATTAATGTTTTCAAAGAAGGAAGCAT 1002 ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1067 GAGTACTTGCTTAGAAGACTGGATTAATGTTTTCAAAGAAGGAAGCAT 1114 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49078761619 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5