BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926231
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69370.1 | Symbols: CM3, cm-3 | chorismate mutase 3 | chr1:2... 1509 0.0
> AT1G69370.1 | Symbols: CM3, cm-3 | chorismate mutase 3 | chr1:26079956-26081727
FORWARD LENGTH=1261
Length=1261
Score = 1509 bits (817), Expect = 0.0
Identities = 948/1008 (94%), Gaps = 22/1008 (2%)
Strand=Plus/Plus
Query 2 TCTT-CTCTTTTGATTCTCCGATGGAGGCTAAGCTACTCAAACCCGCGTTTTCCAATTCC 60
|||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 122 TCTTCCTCTTTTGATTCTCCGATGGAGGCTAAGTTACTCAAACCCGCGTTTTACAATTCC 181
Query 61 CCAAGCCTCAATCTCGCGAATTCTTCAAAACCCATCTCGCAAGTATCAATCTTGAACGGT 120
|||| ||||||||| |||||||||||| || |||||||| | ||||||||| ||||| |
Sbjct 182 CCAAACCTCAATCTTACGAATTCTTCAAGACTCATCTCGCGATTATCAATCTGGAACGAT 241
Query 121 AAATC-GAGGTTTGGACTA---TCTGGGTCTCT-TTCCCTCCGTCTCTCCGCAGCTTCTC 175
||||| | | |||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 242 AAATCAAAAG-TTGGACTATCTTCTGGGTCTCTCTT-CCTCCGTCTCTCCGCAGCTTCTC 299
Query 176 CGATCCGATACTCTAGGGGGCTACTACGGGTTGATGAGAGTGAGTATTTGACACTTGACA 235
|||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| |
Sbjct 300 CGATCCGATACTCTAGGGGGCTACTAAGGGTAGATGAGAGTGAGTATTTGAAACTTGAAA 359
Query 236 GCATTAGACACTCTTTGATTCGTCAAGAGGACAGTATTATCTTTAATCTTCTTGAACGAG 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCATTAGACACTCTTTGATTCGTCAAGAGGACAGTATTATCTTTAATCTTCTTGAACGAG 419
Query 296 CTCAGTATCGCTACAACGCTGATACGTATGACGAGGATGCCTTTACTATGGAAGGTTTTC 355
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 420 CTCAGTATCGCTACAACGCTGATACTTATGACGAGGATGCCTTTACTATGGAAGGGTTTC 479
Query 356 AAGGATCTTTGGTTGAGTTTATGGTCAGAGAAACTGAAAAGCTTCACGCAAAGGTGGACA 415
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAGGATCTTTAGTTGAGTTTATGGTCAGAGAAACTGAAAAGCTTCACGCAAAGGTGGACA 539
Query 416 GGTACAAGAGTCCTGATGAGCATCCCTTTTTCCCACAATGCTTGCCTGAGCCTATTCTTC 475
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 540 GGTACAAGAGTCCTGATGAGCATCCCTTTTTCCCACAATGCTTGCCTGAACCTATCCTTC 599
Query 476 CTCCGATTCAATACCCACAGGTTTTGCATCATTGCGCCGAATTGATAAACATCAACAAGA 535
|||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 600 CTCCTATTCAATACCCACAGGTTTTGCATCGTTGCGCCGAATCGATAAACATCAACAAGA 659
Query 536 AGGTGTGGAATATGTATTTCAAGCACCTTCTTCCTAGACTGGTCAAGCCAGGGGATGACG 595
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 660 AGGTGTGGAATATGTATTTCAAACACCTTCTCCCCAGACTGGTCAAGCCAGGGGATGACG 719
Query 596 GTAATTGTGGCTCAGCTGCTCTCTGTGACACAATGTGTTTGCAGGCAAGAAGCTTGATAC 655
|||||||||| ||||||||||||||||||||||||||||||||| | | | |
Sbjct 720 GTAATTGTGGTTCAGCTGCTCTCTGTGACACAATGTGTTTGCAG--A------T--A--C 767
Query 656 TTTCAAAGAGAATTCACTTTGGTAAATTTGTTGCTGAGGCCAAGTTTCGTGAAAATCCTG 715
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 768 TTTCAAAGAGAATTCACTTTGGTAAATTTGTTGCTGAAGCCAAGTTTCGTGAAAATCCTG 827
Query 716 CTGCCTATGAAACAGCTATCCGAGAACAAGACCGGACACAGCTGATGCGACTTCTAACGT 775
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 828 CTGCCTATGAAACAGCTATCAAAGAACAAGACCGGACACAGCTGATGCAACTTCTAACGT 887
Query 776 ATGAAACGGTTGAAGAAGTAGTCAAGAAGAGAGTTGAGATCAAAGCCAGAATTTTCGGTC 835
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 888 ACGAAACGGTTGAAGAAGTAGTCAAGAAGAGAGTTGAGATCAAAGCCAGAATTTTTGGTC 947
Query 836 AAGACATAACGATCAACGACCCAGAAACTGGAGCTGATCCTTCCTACAAAATTA-AACCT 894
||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 948 AAGACATAACGATTAACGACCCAGAAACTGAAGCTGATCCTTCCTACAAAAT-ACAACCT 1006
Query 895 AGCTTAGTTGCAAAACTCTATGGAGAAAGGATCATGCCCCTCACAAAGGAAGTCCAAATT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AGCTTAGTTGCAAAACTCTATGGAGAAAGGATCATGCCCCTCACAAAGGAAGTCCAAATT 1066
Query 955 GAGTACTTGCTTAGAAGGCTGGATTAATGTTTTCAAAGAAGGAAGCAT 1002
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1067 GAGTACTTGCTTAGAAGACTGGATTAATGTTTTCAAAGAAGGAAGCAT 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5