BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926235
Length=517
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69410.1 | Symbols: ATELF5A-3, ELF5A-3 | eukaryotic elongati... 822 0.0
AT1G26630.1 | Symbols: FBR12, ATELF5A-2, ELF5A-2 | Eukaryotic t... 507 5e-143
AT1G13950.1 | Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | euka... 409 2e-113
> AT1G69410.1 | Symbols: ATELF5A-3, ELF5A-3 | eukaryotic elongation
factor 5A-3 | chr1:26089202-26090386 FORWARD LENGTH=768
Length=768
Score = 822 bits (445), Expect = 0.0
Identities = 491/513 (96%), Gaps = 4/513 (1%)
Strand=Plus/Plus
Query 7 ATTTCGATTGAATCATGTCGGACGACGAGCACCACTTCGAATCCAGCGACGCCGGAGCTT 66
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 87 ATTTCG-CTGAATCATGTCAGACGACGAGCATCACTTCGAATCCAGCGACGCCGGAGCTT 145
Query 67 CGAAGACTTATCCTCAACAAGCCGGTAACATCCGTAAAGGTGGTCACATCGTCATCAAGG 126
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 146 CTAAGACTTATCCTCAACAAGCCGGTAACATTCGTAAAGGTGGTCACATCGTCATCAAGG 205
Query 127 GACGTCCCTGCAAGGTGGTTGAGGTATCAACTTCAAAGACTGGGAAGCATGGTCACGCCA 186
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 206 GACGTCCCTGCAAGGTGGTTGAGGTATCGACTTCGAAGACTGGGAAGCATGGTCACGCCA 265
Query 187 AATGTCATTTTGTTGCCATTGATATCTTCACTTCTAAGAAGCTTGAAGATATCGTTCCTT 246
| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 266 AGTGTCACTTTGTTGCCATTGATATCTTTACTTCTAAGAAGCTTGAAGATATCGTTCCTT 325
Query 247 CTTCCCACAATTGTGATGTTCCACATGTGAATCGTGTTGATTACCAGTTGATTGATATCT 306
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 326 CTTCCCACAATTGTGATGTTCCACATGTGAATCGTGTTGATTATCAGTTGATTGATATCT 385
Query 307 CTGAAGATGGCTTTGTTAGTCTTCTTACTGATAATGGTAGTACTAAGGATGATCTGAAGC 366
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 386 CTGAAGATGGCTTTGTTAGTCTTCTTACTGATAATGGTAGCACTAAGGATGATCTGAAGC 445
Query 367 TGCCAACTGATGAAGCTTTGCTCACACAGCTCAAGAATGGATTTGATGAGGGCAAGGATA 426
||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 446 TGCCAACAGATGAAGCTTTACTCACACAGCTCAAGAATGGATTTGAGGAGGGTAAGGATA 505
Query 427 TAGTTGTGTCTGTCATGTCTGCAATGGGAGAGGAACAGATGTGTGCTCTCAAGGAAGTTG 486
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 506 TTGTTGTGTCTGTCATGTCTGCAATGGGAGAGGAGCAGATGTGTGCTCTCAAGGAAGTTG 565
Query 487 GTCCCAAGTAATAATAA---GTAAGCATTCTCT 516
||||||||||||||||| |||||||||||||
Sbjct 566 GTCCCAAGTAATAATAATAAGTAAGCATTCTCT 598
> AT1G26630.1 | Symbols: FBR12, ATELF5A-2, ELF5A-2 | Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1) protein | chr1:9205836-9207383
FORWARD LENGTH=897
Length=897
Score = 507 bits (274), Expect = 5e-143
Identities = 424/495 (86%), Gaps = 15/495 (3%)
Strand=Plus/Plus
Query 2 TCTC-AATTTCGAT-TG-AATCATGTCGGACGACGAGCACCACTTCGAATCCAGCGACGC 58
|||| |||||| | || || |||||| ||||||||||||||||| || ||||||| |
Sbjct 113 TCTCAAATTTC--TGTGAAAACATGTCTGACGACGAGCACCACTTTGAGGCCAGCGAATC 170
Query 59 CGGAGCTTCGAAGACTTATCCTCAA-CAAGCCGGTAACATCCGTAAAGGTGGTCACATCG 117
||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 171 CGGAGCTTCCAAGACCTATCCTCAATC-AGCCGGTAACATCCGTAAAGGTGGTCACATCG 229
Query 118 TCATCAAGGGAC-GTCCCTGCAAGGTGGTTGAGGTATCAACTTC-AAAGACTGGGAAGCA 175
||||||| || ||||||||||||| |||||||| || ||||| ||| ||||| |||||
Sbjct 230 TCATCAAAA-ACCGTCCCTGCAAGGTTGTTGAGGTTTCGACTTCCAAA-ACTGGCAAGCA 287
Query 176 TGGTCACGCCAAATGTCATTTTGTTGCCATTGATATCTTCACTTCTAAGAAGCTTGAAGA 235
||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 288 CGGTCACGCCAAATGTCACTTTGTTGCTATTGATATCTTCACTGCTAAGAAGCTTGAAGA 347
Query 236 TATCGTTCCTTCTTCCCACAATTGTGATGTTCCACATGTGAATCGTGTTGATTACCAGTT 295
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 348 TATTGTTCCATCTTCCCACAATTGTGATGTTCCACATGTGAACCGTGTTGATTACCAGTT 407
Query 296 GATTGATATCTCTGAAGATGGCTTTGTTAGTCTTCTTACTGATAATGGTAGTACTAAGGA 355
|||||||||| |||| |||||||| || || ||||| ||||| | |||| | || |||||
Sbjct 408 GATTGATATCACTGAGGATGGCTTCGTGAGCCTTCTCACTGACAGTGGTGGCACCAAGGA 467
Query 356 TGATCTGAAGCTGCCAACTGATGAAGCTTTGCTCA-CACAGCTCAAGAATGGATTTGATG 414
|||||| ||||| || || ||||| | | | | | | ||| | | | |||||| ||||
Sbjct 468 TGATCTCAAGCTTCCCACCGATGATGGTCT-CACCGCCCAGATGAGGCTTGGATTCGATG 526
Query 415 AGGGCAAGGATATAGTTGTGTCTGTCATGTCTGCAATGGGAGAGGAACAGATGTGTGCTC 474
|||| |||||||| || ||||||||||||||| | ||||||||||| ||||| ||||| |
Sbjct 527 AGGGAAAGGATATTGTGGTGTCTGTCATGTCTTCCATGGGAGAGGAGCAGATCTGTGC-C 585
Query 475 -TCAAGGAAGTTGGT 488
||||||||||||||
Sbjct 586 GTCAAGGAAGTTGGT 600
> AT1G13950.1 | Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | eukaryotic
elongation factor 5A-1 | chr1:4773576-4774867 FORWARD
LENGTH=731
Length=731
Score = 409 bits (221), Expect = 2e-113
Identities = 400/485 (82%), Gaps = 18/485 (4%)
Strand=Plus/Plus
Query 20 CATGTCGGACGACGAGCACCACTTCGAATCCAGCGACGCCGGAGCTTCGAAGACTTATCC 79
|||||| ||||| ||||| ||||| || ||||| ||||||||||| || || || || ||
Sbjct 55 CATGTCCGACGAGGAGCATCACTTTGAGTCCAGTGACGCCGGAGCGTCCAAAACCTACCC 114
Query 80 TCAACAAGCCGGTAA-CATCCGTAAAG-GTGGTCACATCGTCATCAAGGGA-CGTCCCTG 136
||||||||| || || ||||||| ||| |||| ||||||||||||| | ||||||||
Sbjct 115 TCAACAAGCTGG-AACCATCCGT-AAGAATGGTTACATCGTCATCAA-AAATCGTCCCTG 171
Query 137 CAAGGTGGTTGAGGTATCAACTTCAAAGACTGGGAAGCATGGTCACGCCAAATGTCATTT 196
|||||| |||||||| ||||| || |||||||| ||||||||||| || |||||||||||
Sbjct 172 CAAGGTTGTTGAGGTTTCAACCTCGAAGACTGGCAAGCATGGTCATGCTAAATGTCATTT 231
Query 197 TGTTGCCATTGATATCTTCA-CTTCTAAGAAGCTTGAAGATATCGTTCCTTCTTCCCACA 255
||| || ||||||||||||| | | ||||| || |||||||| ||||||||||||||||
Sbjct 232 TGTAGCTATTGATATCTTCACCAGC-AAGAAACTCGAAGATATTGTTCCTTCTTCCCACA 290
Query 256 ATTGTGATGTTCCACATGTGAATCGTGTTGATTACCAGTTGATTGATATCTCTGAAGATG 315
||||||||||||| ||||| || ||| |||||| ||| ||||||| || ||||||||||
Sbjct 291 ATTGTGATGTTCCTCATGTCAACCGTACTGATTATCAGCTGATTGACATTTCTGAAGATG 350
Query 316 GCTTTGTTAGTCTTCTT-ACTGATAATGGTAGTACTAAGGATGATCTGAAGCTGCC-AAC 373
| | ||| ||| || || |||||||| |||||||| |||||||| || ||||| || ||
Sbjct 351 GATATGTCAGT-TTGTTGACTGATAACGGTAGTACCAAGGATGACCTTAAGCTCCCTAA- 408
Query 374 TGATGA-AGCTTTGCTCACA-CAGCTCAAGAATGGATTTGATGAGGGCAAGGATATAGTT 431
|||||| | || ||||| || ||| |||||| ||| |||||||| || || ||| ||||
Sbjct 409 TGATGACA-CTCTGCTC-CAACAGATCAAGAGTGGGTTTGATGATGGAAAAGATCTAGTG 466
Query 432 GTGTCTGTCATGTCTGCAATGGGAGAGGAACAGATGTGTGCTCTCAAGGA-AGTTGGTCC 490
||| ||| ||||| || ||||||||||||||||| |||||| ||||| | | |||||
Sbjct 467 GTGAGTGTGATGTCAGCTATGGGAGAGGAACAGATCAATGCTCTTAAGGACA-TCGGTCC 525
Query 491 CAAGT 495
|||||
Sbjct 526 CAAGT 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24715200324
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5