BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926241
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69460.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1098 0.0
AT1G26690.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 562 2e-159
> AT1G69460.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr1:26111809-26113243 REVERSE LENGTH=973
Length=973
Score = 1098 bits (594), Expect = 0.0
Identities = 646/671 (96%), Gaps = 3/671 (0%)
Strand=Plus/Plus
Query 3 TTCTCTGGATTTTTC-AAAATGTTTCTCCAATCGCCAAAACTATGGAAGATGCTTCTAAT 61
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 65 TTCTCTGGATTTTTCAAAAATGTTTCTCCAATCGCAAAAACTATGGACGATGCTTCTAAT 124
Query 62 TCTAGCGATTTGGTCACCAATTTCACACTCGCTTCACTTCGATCTACACTCAGGTCGCAC 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TCTAGCGATTTGGTCACCAATTTCACACTCGCTTCACTTCGATCTACACTCAGGTCGCAC 184
Query 122 AAAATGTATCGCCGAAGACATCAAAAGCAATTCAATGACTGTTGGTAAATACAACATCGA 181
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 AAAGTGTATCGCCGAAGACATCAAAAGCAATTCAATGACTGTTGGTAAATACAACATCGA 244
Query 182 TAATCCTCACGAAGGTCAAGCTTTACCACAATCTCACAAAATCTCCGTCAAGGTGACGTC 241
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 245 TAATCCTCACGAAGGTCAAGCTTTACCACAAACTCACAAAATTTCCGTCAAGGTGACGTC 304
Query 242 TAATTCCGGGAACAATTACCATCACGCGGAACAAGTTGATTCGGGACAATTCGCGTTCTC 301
||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 305 TAATTCCGGTAACAATTACCATCACGCGGAACAAGTAGATTCAGGACAATTCGCATTCTC 364
Query 302 TGCTATAGAAGCAGGAGATTACATGGCTTGCTTCACTGCTGTTGATCATAAGCCTGAGGT 361
||| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 365 GGCTGTTGAAGCAGGTGATTACATGGCTTGTTTCACTGCTGTTGATCATAAGCCTGAGGT 424
Query 362 TTCGTTGAGTATTGATTTTGAGTGGAAGACTGGTGTTCAATCTAAAAGCTGGGCTAATGT 421
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TTCGTTGAGTATTGACTTTGAGTGGAAGACTGGTGTTCAATCTAAAAGCTGGGCTAATGT 484
Query 422 TGCTAAGAAGAGCCAAGTCGAAGTTATGGAATTTGAGGTTAAGAGTCTTCTTGATACCGT 481
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 485 TGCTAAGAAGAGTCAAGTCGAAGTTATGGAATTTGAAGTAAAGAGTCTTCTTGATACTGT 544
Query 482 TAACTCGATTCATGAAGAGATGTATTATCTTAGAGATAGGGAAGAAGAGATGCAAGATCT 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 545 TAACTCGATTCATGAAGAGATGTATTATCTTAGAGATAGGGAAGAAGAGATGCAAGA-CT 603
Query 542 -GAACCGGTCCACTAACACGAAAATGGCGTGGTTGAGTGTGCTCTCGTTTTTCGTCTGCA 600
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 604 TGAACCGGTCCACTAACACAAAAATGGCGTGGTTGAGTGTTCTCTCGTTTTTCGTCTGCA 663
Query 601 TAGGAGTGGCAGGGATGCAGTTTTTGCACTTGAAGACGTTTTTCGAGAAGAAGAAGGTTA 660
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TAGGAGTTGCAGGGATGCAGTTTTTGCACTTGAAGACGTTTTTCGAGAAGAAGAAGGTTA 723
Query 661 TCTGAAACTCT 671
|||||||||||
Sbjct 724 TCTGAAACTCT 734
> AT1G26690.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr1:9224145-9225775 REVERSE LENGTH=892
Length=892
Score = 562 bits (304), Expect = 2e-159
Identities = 513/612 (84%), Gaps = 22/612 (4%)
Strand=Plus/Plus
Query 63 CTAGCGATTTGGTCACCAA-TTTCACACTCGCTTCACTTCG-ATCTACACTCAGGTCGCA 120
|||||||||| ||| ||| |||| || || || ||||||| || | || || ||||| |
Sbjct 136 CTAGCGATTTCATCA-CAAGTTTCTCAATCTCTCCACTTCGAAT-TGCAATCTGGTCGAA 193
Query 121 CAAAATGTATCGCCGAAGACATCAAAAGCAATTCAATGACTGTTGGTAAATACAACATCG 180
|||||||||| | |||||||| ||||||||||||||||| || || || |||| | |||
Sbjct 194 CAAAATGTATATCGGAAGACATAAAAAGCAATTCAATGACCGTCGGGAAGTACACCGTCG 253
Query 181 ATAATCCTCACGAAGGTCAAGCTT-TACCACAATCTCACAAAATCTCCGTCAAG-GTGAC 238
||| ||| |||||| ||| ||| | || ||||||||||| |||||| || || |||||
Sbjct 254 TTAACCCTAACGAAGCTCATCCTTCT-CCTCAATCTCACAAGATCTCCATC-AGAGTGAC 311
Query 239 GTCTAATTCCGGGAACAATTACCATCACGCGGAACAAGTTGATTCGGGACAATTCGCGTT 298
|| | || |||||||| || |||||||||||| | || || |||||||||||||||||
Sbjct 312 ATCGAGTTACGGGAACACGTATCATCACGCGGAAGATGTAGAATCGGGACAATTCGCGTT 371
Query 299 CTCTGCTATAGAAG-CAGGAGATTACATGGCTTGCTT-CACTGCTGTTGATCATAAGCCT 356
| | || | | || | ||||||||||||||||| || ||| |||||||||||||| |||
Sbjct 372 CACGGCGGT-GGAGTCTGGAGATTACATGGCTTG-TTACACAGCTGTTGATCATAAACCT 429
Query 357 GAGGTTTCGTTGAGTATTGATTTTGAGTGGAAG-ACTGGTGTTCAATCTAAAAGCTGG-G 414
|||||| | |||||||||||||| || ||| || |||||||||||||||||||||||| |
Sbjct 430 GAGGTTACATTGAGTATTGATTTCGATTGG-AGAACTGGTGTTCAATCTAAAAGCTGGAG 488
Query 415 CTAATGTTGCTAAGAAGAGCCAAGTCGAAGTTATGGAATTTGAGGTTAAGAGTCTTCTTG 474
|| ||||||||||||||||||||||||||||||||| ||||| || || || ||| |||
Sbjct 489 -TAGTGTTGCTAAGAAGAGCCAAGTCGAAGTTATGGAGTTTGATGTAAAAAGACTTATTG 547
Query 475 ATACCGTTAACTCGATTCATGAAGAGATGTATTATCTTAGAGATAGGGAAGAAGAGATGC 534
| ||||| || ||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 548 AAACCGTCAATTCGATTCATGAAGAGATGTTTTATCTCAGAGAAAGGGAAGAAGAGATGC 607
Query 535 AAGA-TCTGAACCGGTCCACTAACACGAAAATGGCGTGGTTGAGTGTGCTCTCGT-TTTT 592
| || |||||||||| | |||||| |||||||||||||||||||| | ||||| | ||||
Sbjct 608 A-GAATCTGAACCGGGCTACTAACTCGAAAATGGCGTGGTTGAGTTTCCTCTC-TCTTTT 665
Query 593 CGTCTGCATAGGAGTGGCAGGGA-TGCAGTTTTTGCACTTGAAGACGTTTTTCGAGAAGA 651
||| ||| ||||||| || |||| |||||||| |||| ||||||||||||||||||||||
Sbjct 666 CGTATGCTTAGGAGTCGC-GGGAATGCAGTTTGTGCATTTGAAGACGTTTTTCGAGAAGA 724
Query 652 AGAAGGTTATCT 663
|||| || ||||
Sbjct 725 AGAAAGTCATCT 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5