BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926242
Length=460
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69470.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 540 5e-153
> AT1G69470.1 | Symbols: | unknown protein; Has 6 Blast hits to
6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:26113575-26113997 FORWARD LENGTH=423
Length=423
Score = 540 bits (292), Expect = 5e-153
Identities = 381/424 (90%), Gaps = 5/424 (1%)
Strand=Plus/Plus
Query 21 ATGTCAAAAAAGATTAACGAGCTTCTTCGTTACTGTGAAGAGAACT-T-T-GAGAGAGGA 77
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1 ATGTCAAAAAAGATTAACGAGCTTCTTCGTTACTGTGAAGAGAACTATATTGAGAGAGGA 60
Query 78 AATCTCGAACTTGCATTACGATGTGCTATTTCAATCTCCATAGCGAATCCTGACGCTCCT 137
| ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct 61 AGTCTCGAACTTGCATTACGATGTGCTGTTTCAATCTGCAAAGCGAATCCTGACGCTCCT 120
Query 138 GAACCTTATGCACACGTCGCTGCTTATAGAATCCTTTTGACGGTAGCTAACAATCGCATG 197
|| |||||||||||||||| ||||| |||||||||||||||| ||| || |||| | |
Sbjct 121 CAAGCTTATGCACACGTCGCCGCTTACAGAATCCTTTTGACGGCAGCCAATTATCGTACG 180
Query 198 GTCACAGGAGAGCCCGACTGGTACGCTGTGTTGGGAATCAACAAACGCGGATCCTCGAAG 257
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTCACAGGAGAGCCTGACTGGTACGCTGTGTTGGGAATCAACAAACGCGGATCCTCAAAG 240
Query 258 TCGGTGGC-AATTTCCATTGAGAGGCGGTGCGAGGAGATCATAGAAGTGTTGGATGGCGA 316
|| |||| || | ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 241 TCTGTGGTGAACG-CTATTGATAGGCGGTGCGAGGAGATCATAGAGGTGTTGGATGGCGA 299
Query 317 GGCTGGGCTTTCCAAGGCTGTTTTGAGGGTTTATGATCTGGTCAGAATCGGTGTGGCAGA 376
||||| | ||||| ||||||| |||||||||||||||||||||| | || || | ||
Sbjct 300 AACTGGGGTCTCCAAAGCTGTTTCGAGGGTTTATGATCTGGTCAGACTTGGCGTATCGGA 359
Query 377 GTTGATGGACGAAGATAGGAGAAGAGCATATGATCTCCGTTGTGGATTTTCTAATATCAA 436
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 360 GTTGATGGACGAAGATAGGAGAAGAGCGTATGATCTCCGTTCTGGATTTTCTATTATCAA 419
Query 437 CTGA 440
||||
Sbjct 420 CTGA 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21916738564
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5