BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926257

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G69588.1 | Symbols: CLE45 | CLAVATA3/ESR-RELATED 45 | chr1:2...   479    9e-135


> AT1G69588.1 | Symbols: CLE45 | CLAVATA3/ESR-RELATED 45 | chr1:26178042-26178925 
FORWARD LENGTH=884
Length=884

 Score =  479 bits (259),  Expect = 9e-135
 Identities = 369/418 (88%), Gaps = 23/418 (6%)
 Strand=Plus/Plus

Query  1    TCTTGTCTGCCTAAGAGCAGAAATGTTGGGTTCCAGTACAAGATCGATGCTTTTTCTTCT  60
            ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct  87   TCTTGTCTGCCTAAGAGCAGAAATGTTGGGTTCCAGTACAAGATCAATGTTTTTTCTTCT  146

Query  61   TGTCTGCATAGGATTACTAGCAGACAACAGATATAAGGTCTCAGCCATGAGACATAGAGA  120
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  147  CGTCTGCATAGGATTACTAGCAGACAACAGATATAATGTCTCAGCCATGAGACATAGAGA  206

Query  121  GTTTTTCCTC----AAACA-AA-C------A-C---AG--C---CAGAGGAAATTTCTAA  159
            ||||||||||    ||||| || |      | |   ||  |   ||||||||||||||||
Sbjct  207  GTTTTTCCTCAAAGAAACACAAGCAGAAAAAGCAGGAGTTCAGACAGAGGAAATTTCTAA  266

Query  160  GGTCAGGAGCACCGGTTTTCAATTCAAACACACCCTTGAAGATCAAGGAATGCTCAGGGA  219
            | ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||   |
Sbjct  267  GCTCAGGAGCATCGGTGTTCAATTCAAACACACCCTTGAAGATCAAGAAATGCTCAATAA  326

Query  220  AAACAGGCGCGTTCTGGAGGAGGTTAAC-AAGAATACAGTCAAAGCTGAGGAGACGCAAG  278
            |||| | |||||||| ||||| |||||| ||| ||| | |||||||||||||||| ||||
Sbjct  327  AAACCGACGCGTTCTCGAGGAAGTTAACAAAG-ATAAAATCAAAGCTGAGGAGACACAAG  385

Query  279  AACAAAAGAATAAGACAGATGACACATTCCAATCAAGCAAGAGACGTGTAAGACGAGGAT  338
            ||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct  386  AACGAAAGAATAAGACAGAAGACTCATTCAAATCAAGCAAGAGACGTGTAAGACGAGGAT  445

Query  339  CAGATCCTATCCACAACAAAGCTCAGCCATTTTCTTAAGCGGCACAAGAGCATTCAAA  396
            |||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||
Sbjct  446  CAGATCCTATCCACAACAAAGCTCAGCCATTTTCTTAAACGGCGCAAGAGAAATCAAA  503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5