BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926258
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69600.1 | Symbols: ZFHD1, ATHB29, ZHD11 | zinc finger homeo... 1040 0.0
> AT1G69600.1 | Symbols: ZFHD1, ATHB29, ZHD11 | zinc finger homeodomain
1 | chr1:26182470-26183198 FORWARD LENGTH=729
Length=729
Score = 1040 bits (563), Expect = 0.0
Identities = 637/671 (95%), Gaps = 12/671 (2%)
Strand=Plus/Plus
Query 73 CCGGAGAAATGGGTGTTTGTTACAAAGAGTGTTTGAAAAACCACGCGGCTAATCTCGGCG 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 CCGGAGAAATGGGTGTTTGTTACAAAGAGTGTTTGAAAAACCACGCGGCTAATCTCGGCG 130
Query 133 GTCATGCTCTTGACGGTTGCGGCGAGTTTATGCCGAGTCCCACCGCTAGTTCCACCGATC 192
| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 131 GCCATGCTCTCGACGGTTGCGGCGAGTTTATGCCGAGTCCCACGGCTACTTCCACCGATC 190
Query 193 CTTCTTCTCTCCGTTGCGCCGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGACCCTT 252
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CTTCTTCTCTCCGTTGCGCTGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGACCCTT 250
Query 253 CCGAGAATCTCAACTTCTTCACCGCGCCGCCGATTTCTTCTCCTTCCGGCACTGAGTCGC 312
||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 251 CCGAGAATCTCAACTTCCTCACCGCGCCTCCGATTTCTTCTCCCTCCGGCACTGAGTCGC 310
Query 313 CGCCATCTCGTCACGTGTCTTCTCCTGTTCCTTGCTCTTACTACACCTCAGCTCCTCCAC 372
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CGCCGTCTCGTCACGTGTCTTCTCCTGTTCCTTGCTCTTACTACACCTCAGCTCCTCCAC 370
Query 373 ATCACGTGATTCTCTCTCTTAGCTCCGGTTTTCCTGGACCGTCAGATCAAGATCCAACGG 432
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 371 ATCACGTGATTCTCTCTCTCAGCTCCGGTTTCCCTGGACCGTCAGATCAAGATCCAACGG 430
Query 433 TGGTTAGGTCAGAGAACAGCTCAAGAGGAGCAATGAGGAAACGAACCAGAACCAAATTCA 492
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 431 TGGTTAGGTCAGAGAACAGTTCAAGAGGAGCAATGAGGAAACGAACAAGAACCAAATTCA 490
Query 493 CGCCGGAGCAGAAGATCAAGATGAGAGCGTTCGCTGAGAAAGCAGGTTGGAAAATCAACG 552
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 491 CGCCGGAGCAGAAGATCAAGATGAGAGCCTTCGCAGAGAAAGCTGGTTGGAAAATCAACG 550
Query 553 GCTGTGATGAAAAGTCTGTGAGAAATTTTTGTAACGAAGTTGGGATTGAGAGAGGAGTTC 612
| |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 551 GATGTGATGAAAAGTCGGTGAGAGAGTTTTGTAACGAAGTTGGGATTGAGAGAGGAGTTC 610
Query 613 TTAAAGTGTGGATGCATAACAACAAGTACTCACTTCTCAATGGCAAGATCAGAGAGATCG 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TTAAAGTGTGGATGCATAACAACAAGTACTCACTTCTCAATGGCAAGATCAGAGAGATCG 670
Query 673 AACATGGTCTGTGTCTGAACACTATTACTCACAGCTGTAACAATGATGGTGATGGGTCTT 732
||||||| ||||||||||||||| | ||||| || |||||||||||||||||
Sbjct 671 AACATGGCCTGTGTCTGAACACT----C--ACAGC---AA---TGATGGTGATGGGTCTT 718
Query 733 CGTCTTCTTGA 743
| |||||||||
Sbjct 719 CATCTTCTTGA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5