BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926260
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69620.1 | Symbols: RPL34 | ribosomal protein L34 | chr1:261... 804 0.0
AT1G26880.1 | Symbols: | Ribosomal protein L34e superfamily pr... 422 2e-117
AT3G28900.1 | Symbols: | Ribosomal protein L34e superfamily pr... 281 3e-75
> AT1G69620.1 | Symbols: RPL34 | ribosomal protein L34 | chr1:26189836-26191323
FORWARD LENGTH=666
Length=666
Score = 804 bits (435), Expect = 0.0
Identities = 479/500 (96%), Gaps = 3/500 (1%)
Strand=Plus/Plus
Query 1 GAGTGAGAGATAGAGAAGCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGCT 60
|||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 42 GAGTGAGACAGAGAGAAGCGAAAATGGTGCAGCGCCTTGTTTACCGATCACGACACAGTT 101
Query 61 ACGCCACCAAATCAAACCAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATC 120
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 102 ACGCCACCAAATCCAACCAGCACAGGATCGTCAAAACTCCAGGAGGTAAATTGACGTACC 161
Query 121 AGACCACTAAGAAGAGAGCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 AGACCACTAAGAAGAGAGCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGG 221
Query 181 GTATTCCTCACTTGAGGCCATCTGAGTACAAGAGATCGCGTTTATCAAGAAACAGAAGGA 240
|||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||
Sbjct 222 GTATTCCTCACTTGAGGCCAACTGAGTACAAGAGGTCACGTTTATCAAGAAACAGGAGGA 281
Query 241 CTGTGAACCGTGCTTATGGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTC 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 CCGTGAACCGTGCTTATGGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTC 341
Query 301 GTGCTTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGCAA 360
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 342 GTGCCTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCAA 401
Query 361 AGGAAAAGGTTGCTCCCAAGAG--CTAGACCCTATTAGTTTTTATGTTTTATGGCTCTGT 418
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 402 AGGAAAAGGTTGCTCCCAAGTGATCTAGACCCTATTAGTTTTTATGTTTTATGGCTCTGT 461
Query 419 TCTAGCGATAGTTCTGGTTGCAGAGAAAAAACATTGTGTACTCGTCAAAAAATTTAAGCT 478
|||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 462 TCTAGCGATAGTACTGGTTGCAGAGAAAAA-CATTGTGTACTCATCAAAAAATTTAAGCT 520
Query 479 TTTTTGTATTGGTTTTGGAT 498
||||||||||||||||||||
Sbjct 521 TTTTTGTATTGGTTTTGGAT 540
> AT1G26880.1 | Symbols: | Ribosomal protein L34e superfamily
protein | chr1:9315383-9316729 REVERSE LENGTH=668
Length=668
Score = 422 bits (228), Expect = 2e-117
Identities = 322/368 (88%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 18 GCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGCTACGCCACCAAATCAAAC 77
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct 43 GCGAAAATGGTGCAGCGTCTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAAC 102
Query 78 CAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATCAGACCACTAAGAAGAGA 137
|||||||| |||||||| |||||||||||||||||| |||||| ||||| |||||||||
Sbjct 103 CAGCACCGTATCGTCAAGACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGA 162
Query 138 GCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGGGTATTCCTCACTTGAGG 197
|||||||| || |||||||| ||||| |||||||||||||| || || ||||||||||||
Sbjct 163 GCTAGTGGCCCCAAATGTCCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGG 222
Query 198 CCATCTGAGTACAAGAGATCGCGTTTATCAAGAAACAGAAGGACTGTGAACCGTGCTTAT 257
|| |||||||||||||| || | |||||||||||||| |||||||| ||||| || ||
Sbjct 223 CCCTCTGAGTACAAGAGGTCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATAC 282
Query 258 GGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTCGTGCTTTCCTTGTGGAG 317
||||| || |||||||||||||| || |||||||| |||||||| || |||||||| ||
Sbjct 283 GGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGGATCATTCGGGCATTCCTTGTCGAA 342
Query 318 GAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGCAAAGGA-AAAGGTTGCTCC 376
|||||||||||||||||||| || ||||| || |||||||| ||||| |||| | || ||
Sbjct 343 GAGCAAAAGATTGTGAAGAAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAG-TAGCCCC 401
Query 377 CAAGAGCT 384
|||| |||
Sbjct 402 CAAG-GCT 408
> AT3G28900.1 | Symbols: | Ribosomal protein L34e superfamily
protein | chr3:10902647-10904458 REVERSE LENGTH=623
Length=623
Score = 281 bits (152), Expect = 3e-75
Identities = 307/380 (81%), Gaps = 18/380 (5%)
Strand=Plus/Plus
Query 17 AGCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGC-TACGCCACCAAATCAA 75
||| |||||||| || |||||||||||||||||||||||| | ||||||||||| || |
Sbjct 37 AGCAAAAATGGTTCAACGTCTTGTTTACCGATCACGTCAC-TCTTACGCCACCAAGTCCA 95
Query 76 ACCAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATCAGACCACTAAGAAGA 135
|||| ||||| |||||||||||||| || || |||||||| || ||||| || || ||||
Sbjct 96 ACCAACACCGCATCGTCAAAACTCCTGGTGGAAAATTGACTTACCAGACGACGAACAAGA 155
Query 136 GAGCTAGTGGACCTAAATGTCCC-GTTACCGGCAAGCGTATTC-AGGGTATTCCTCACTT 193
|||||||||||||||| || ||| ||||| |||||| | || | |||| ||||| || ||
Sbjct 156 GAGCTAGTGGACCTAAGTG-CCCTGTTACTGGCAAGAGAATCCAAGGG-ATTCCGCATTT 213
Query 194 GAGGCCAT-CTGAGTACAAGAGATCGCGTTTATCAAGAAACAGA-AGGACTGTGAACCGT 251
||| || | |||||||||| || || | || |||| ||| || ||||| ||||| |||
Sbjct 214 GAGACC-TGCTGAGTACAAAAGGTCAAGGTTGGCAAGGAAC-GAGAGGACAGTGAATCGT 271
Query 252 GCTTATGGTGGGGTTTTGTCTGG-TTCTGCTGTTAGGGAAAGAATCATTC-GTGCTTTCC 309
|| |||||||| ||| | ||||| | |||||||||||| || ||| || | || || |
Sbjct 272 GCATATGGTGGTGTTCTATCTGGAGT-TGCTGTTAGGGAGAGGATC-GTCAGGGCCTT-C 328
Query 310 TT-GTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGC-AAAGGAAAA 367
|| || || || || ||||||||||||||||||||||||||||| ||||| |||| | ||
Sbjct 329 TTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCGAAAG-AGAA 387
Query 368 GGTTGCTCCCAAGAGCTAGA 387
| ||| || ||||| ||||
Sbjct 388 GACTGCACCAAAGAGTTAGA 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23760751531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5