BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926260 Length=498 Score E Sequences producing significant alignments: (Bits) Value AT1G69620.1 | Symbols: RPL34 | ribosomal protein L34 | chr1:261... 804 0.0 AT1G26880.1 | Symbols: | Ribosomal protein L34e superfamily pr... 422 2e-117 AT3G28900.1 | Symbols: | Ribosomal protein L34e superfamily pr... 281 3e-75 > AT1G69620.1 | Symbols: RPL34 | ribosomal protein L34 | chr1:26189836-26191323 FORWARD LENGTH=666 Length=666 Score = 804 bits (435), Expect = 0.0 Identities = 479/500 (96%), Gaps = 3/500 (1%) Strand=Plus/Plus Query 1 GAGTGAGAGATAGAGAAGCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGCT 60 |||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 42 GAGTGAGACAGAGAGAAGCGAAAATGGTGCAGCGCCTTGTTTACCGATCACGACACAGTT 101 Query 61 ACGCCACCAAATCAAACCAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATC 120 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 102 ACGCCACCAAATCCAACCAGCACAGGATCGTCAAAACTCCAGGAGGTAAATTGACGTACC 161 Query 121 AGACCACTAAGAAGAGAGCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 AGACCACTAAGAAGAGAGCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGG 221 Query 181 GTATTCCTCACTTGAGGCCATCTGAGTACAAGAGATCGCGTTTATCAAGAAACAGAAGGA 240 |||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||| Sbjct 222 GTATTCCTCACTTGAGGCCAACTGAGTACAAGAGGTCACGTTTATCAAGAAACAGGAGGA 281 Query 241 CTGTGAACCGTGCTTATGGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTC 300 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 CCGTGAACCGTGCTTATGGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTC 341 Query 301 GTGCTTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGCAA 360 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 342 GTGCCTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCAA 401 Query 361 AGGAAAAGGTTGCTCCCAAGAG--CTAGACCCTATTAGTTTTTATGTTTTATGGCTCTGT 418 |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 402 AGGAAAAGGTTGCTCCCAAGTGATCTAGACCCTATTAGTTTTTATGTTTTATGGCTCTGT 461 Query 419 TCTAGCGATAGTTCTGGTTGCAGAGAAAAAACATTGTGTACTCGTCAAAAAATTTAAGCT 478 |||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 462 TCTAGCGATAGTACTGGTTGCAGAGAAAAA-CATTGTGTACTCATCAAAAAATTTAAGCT 520 Query 479 TTTTTGTATTGGTTTTGGAT 498 |||||||||||||||||||| Sbjct 521 TTTTTGTATTGGTTTTGGAT 540 > AT1G26880.1 | Symbols: | Ribosomal protein L34e superfamily protein | chr1:9315383-9316729 REVERSE LENGTH=668 Length=668 Score = 422 bits (228), Expect = 2e-117 Identities = 322/368 (88%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 18 GCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGCTACGCCACCAAATCAAAC 77 ||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||| Sbjct 43 GCGAAAATGGTGCAGCGTCTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAAC 102 Query 78 CAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATCAGACCACTAAGAAGAGA 137 |||||||| |||||||| |||||||||||||||||| |||||| ||||| ||||||||| Sbjct 103 CAGCACCGTATCGTCAAGACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGA 162 Query 138 GCTAGTGGACCTAAATGTCCCGTTACCGGCAAGCGTATTCAGGGTATTCCTCACTTGAGG 197 |||||||| || |||||||| ||||| |||||||||||||| || || |||||||||||| Sbjct 163 GCTAGTGGCCCCAAATGTCCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGG 222 Query 198 CCATCTGAGTACAAGAGATCGCGTTTATCAAGAAACAGAAGGACTGTGAACCGTGCTTAT 257 || |||||||||||||| || | |||||||||||||| |||||||| ||||| || || Sbjct 223 CCCTCTGAGTACAAGAGGTCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATAC 282 Query 258 GGTGGGGTTTTGTCTGGTTCTGCTGTTAGGGAAAGAATCATTCGTGCTTTCCTTGTGGAG 317 ||||| || |||||||||||||| || |||||||| |||||||| || |||||||| || Sbjct 283 GGTGGAGTCTTGTCTGGTTCTGCAGTCAGGGAAAGGATCATTCGGGCATTCCTTGTCGAA 342 Query 318 GAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGCAAAGGA-AAAGGTTGCTCC 376 |||||||||||||||||||| || ||||| || |||||||| ||||| |||| | || || Sbjct 343 GAGCAAAAGATTGTGAAGAAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAG-TAGCCCC 401 Query 377 CAAGAGCT 384 |||| ||| Sbjct 402 CAAG-GCT 408 > AT3G28900.1 | Symbols: | Ribosomal protein L34e superfamily protein | chr3:10902647-10904458 REVERSE LENGTH=623 Length=623 Score = 281 bits (152), Expect = 3e-75 Identities = 307/380 (81%), Gaps = 18/380 (5%) Strand=Plus/Plus Query 17 AGCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGC-TACGCCACCAAATCAA 75 ||| |||||||| || |||||||||||||||||||||||| | ||||||||||| || | Sbjct 37 AGCAAAAATGGTTCAACGTCTTGTTTACCGATCACGTCAC-TCTTACGCCACCAAGTCCA 95 Query 76 ACCAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATCAGACCACTAAGAAGA 135 |||| ||||| |||||||||||||| || || |||||||| || ||||| || || |||| Sbjct 96 ACCAACACCGCATCGTCAAAACTCCTGGTGGAAAATTGACTTACCAGACGACGAACAAGA 155 Query 136 GAGCTAGTGGACCTAAATGTCCC-GTTACCGGCAAGCGTATTC-AGGGTATTCCTCACTT 193 |||||||||||||||| || ||| ||||| |||||| | || | |||| ||||| || || Sbjct 156 GAGCTAGTGGACCTAAGTG-CCCTGTTACTGGCAAGAGAATCCAAGGG-ATTCCGCATTT 213 Query 194 GAGGCCAT-CTGAGTACAAGAGATCGCGTTTATCAAGAAACAGA-AGGACTGTGAACCGT 251 ||| || | |||||||||| || || | || |||| ||| || ||||| ||||| ||| Sbjct 214 GAGACC-TGCTGAGTACAAAAGGTCAAGGTTGGCAAGGAAC-GAGAGGACAGTGAATCGT 271 Query 252 GCTTATGGTGGGGTTTTGTCTGG-TTCTGCTGTTAGGGAAAGAATCATTC-GTGCTTTCC 309 || |||||||| ||| | ||||| | |||||||||||| || ||| || | || || | Sbjct 272 GCATATGGTGGTGTTCTATCTGGAGT-TGCTGTTAGGGAGAGGATC-GTCAGGGCCTT-C 328 Query 310 TT-GTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGC-AAAGGAAAA 367 || || || || || ||||||||||||||||||||||||||||| ||||| |||| | || Sbjct 329 TTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCGAAAG-AGAA 387 Query 368 GGTTGCTCCCAAGAGCTAGA 387 | ||| || ||||| |||| Sbjct 388 GACTGCACCAAAGAGTTAGA 407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23760751531 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5