BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg926261 Length=1069 Score E Sequences producing significant alignments: (Bits) Value AT3G09385.1 | Symbols: | pseudogene, hypothetical protein | ch... 451 6e-126 AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superf... 398 7e-110 AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superf... 353 2e-96 AT4G21605.1 | Symbols: | pseudogene, hypothetical protein | ch... 348 7e-95 > AT3G09385.1 | Symbols: | pseudogene, hypothetical protein | chr3:2886535-2887714 FORWARD LENGTH=1180 Length=1180 Score = 451 bits (244), Expect = 6e-126 Identities = 681/880 (77%), Gaps = 78/880 (9%) Strand=Plus/Plus Query 220 CAAAAAGGATTTTGGTCCCGATTTCATCTCCTAATTTTCCATCTGCA-CGATGGTCAAAA 278 |||||| |||||||| |||||||||||||||||||||||||||||| | ||||| | Sbjct 332 CAAAAA-AATTTTGGTTCCGATTTCATCTCCTAATTTTCCATCTGCATCC-TGGTCGGAT 389 Query 279 GTTGCGGCGGTTGGTCCTAATATCTACTCC-ATCGGCGGATTGG-AACATAACATGTCAA 336 | ||| || |||||||| ||||| | | || || || || | || |||| | || Sbjct 390 GCTGCAATAGTCGGTCCTAACATCTA-TGCTATTGGAGGGTTAGTAA-ATAA---G--AA 442 Query 337 GTAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTCTCACACATGGTGTGAGGCCC 396 || |||||||| |||||||| |||||| ||| ||||||||||||| ||||||| | Sbjct 443 TTA----TTCGTCTAGCGTCATGGTCATGGATTGTTATTCTCACACATGGCGTGAGGCAC 498 Query 397 CAAGCATGCATGTGGCCCGTGAATTCCATTCTGTTTGCG-CCTTTGATGGGAAAATATAT 455 |||| ||||||||||||||| | ||| |||||||| | || | ||||||||||||||| Sbjct 499 CAAGTATGCATGTGGCCCGTTTGTCCCACTCTGTTTGTGTCCAT-GATGGGAAAATATAT 557 Query 456 GTAACGGGAGCAAACGAAAATCTTGATTCAACGAATTGGATGG-GTGTTTTTGATACAAA 514 ||||| |||| | ||||||||||||||||||||||||||| | ||||||||||| | Sbjct 558 GTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGGATGGAG-GTTTTTGATACGCA 616 Query 515 CACCCGAACTTGGGAGTATTTACAGATCCCTGGCAAGGAGCTATGCAGAGCCTCTCAGTT 574 |||| ||||||||||| ||| ||||||||| || ||||| ||| ||| ||| ||| Sbjct 617 GACCCAAACTTGGGAGTTTTTGCAGATCCCTAGCGAGGAGATATTTGGAGGCTCAAAGTA 676 Query 575 -AGAAAGCGTATG-GTATGAAGGAACCT-TGTATGTGAGGTCCGAGAAAAAGAATGTAAC 631 |||| ||||| | |||||||||||| | | ||||| | ||| ||| |||| |||| || Sbjct 677 CAGAA-GCGTA-GAGTATGAAGGAAC-TGTCTATGTAAAGTCTGAGGCAAAGGATGTGAC 733 Query 632 TTACAAGCTGCATAAAGGTAGATGGAGAA-AGGTAGAT-TATGCTATGAATTATGGATGG 689 ||||||||||||||||||||||||| ||| || ||| || || || ||| | || ||| Sbjct 734 TTACAAGCTGCATAAAGGTAGATGGCGAACAGC-AGACATA-GCGATAAATAAAGGGTGG 791 Query 690 -G--GTCGCT-CATCATC---TTATTGTGTGATAGAGAACGTGTTTTACCATAATTTTGG 742 | ||| || ||| ||| |||||||||||||||||||||||| |||| | || || Sbjct 792 TGATGTC-CTTCATTATCCCATTATTGTGTGATAGAGAACGTGTTCTACCGTTATACTGA 850 Query 743 TACTACGATAT--ATTGGTTTGACTCCCAAAAAAGATCATGGAAAA-TTCTGAAGGGTTT 799 || | || || | |||| ||||||| ||||||||| ||||| || || |||| ||| | Sbjct 851 TAGAA-GA-ATCGAATGGTATGACTCCGAAAAAAGATTATGGACAACTT-TGAAAGGTGT 907 Query 800 GGAAAGTTTGTGTAAGTCTCTTTGCAATAAAAGCGCCAAGTACTTGGTGGATTATGGTGG 859 ||||| ||| ||| || | ||| | | | | || |||||||| |||||||||| Sbjct 908 GGAAAAATTGCGTA-GT-T-TTT-C--TC---GTGT-AA--ACTTGGTGAATTATGGTGG 955 Query 860 GAAAATTGCGGTTTTGT-GGCAAGATTATGTGTCTC--TCAAGTTCCCTAGAGAGACATC 916 |||||| || ||| ||| || | || ||||||| || | ||| || ||| || Sbjct 956 GAAAATGGCAGTTGTGTCGGTA-GAGTATGTGT-TCGGT-AAGA-----AG-GAGGCAAA 1006 Query 917 GATTTGGTGTGCGGAAATTGCGATTGAAAAACG-CGAAAACGGC-GAGATTTGGGGGATG 974 |||||||| ||||||||||||||||||||||| | ||| ||| ||||||||||| ||| Sbjct 1007 AATTTGGTGGGCGGAAATTGCGATTGAAAAACGTC-AAA-CGGGAGAGATTTGGGGAATG 1064 Query 975 CTAGAGTGGGTTGACATTGTCTTTACAACCGATAATCCA-TC-TA-A-TTTAGTGCATGC 1030 ||||||||| |||||||||| |||| |||| || | | | || || | ||||| || ||| Sbjct 1065 CTAGAGTGGCTTGACATTGTGTTTAGAACCAATGA-CAAGTCATATAGTTTAGAGCGTGC 1123 Query 1031 TCTTACTACTACCGTTTGATGAATATGAGTCATGA-TCAT 1069 |||| |||||||| ||||||| ||||| |||||| |||| Sbjct 1124 TCTTGCTACTACCATTTGATGGCTATGAATCATGACTCAT 1163 > AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:16368087-16369025 FORWARD LENGTH=882 Length=882 Score = 398 bits (215), Expect = 7e-110 Identities = 608/784 (78%), Gaps = 81/784 (10%) Strand=Plus/Plus Query 24 ACAATTCTGATGCTTCCTGATGATGTGGTATTAAACTGCTTAGCCCGCGTCTCAAGATTG 83 ||||| |||||||||| ||||||| | |||||||||||||||| ||||||||||||| Sbjct 31 ACAATGCTGATGCTTCATGATGATTTAATATTAAACTGCTTAGCGCGCGTCTCAAGATCA 90 Query 84 TACTACCCAACTCTCTCCTTGGTCTCTAAGAAATTCCGTTCTCTCCTTTCTTCA-AAGGA 142 || | ||||||||||| || || | ||||| ||| | ||||||||| ||||| | || Sbjct 91 AACCATCCAACTCTCTCATTAGTATGTAAGAGATTTCACTCTCTCCTTGCTTCAGTA-GA 149 Query 143 GCTTTACCAGACCCGAACCCTCTTAGGCCGCACCGAGAGTTTTCTTTATGTGTTCTTACG 202 ||||||||| ||||||||||||||||||||||||||||| | || |||| || Sbjct 150 GCTTTACCAAACCCGAACCCTCTTAGGCCGCACCGAGAGGT--------GT-TTCT-AC- 198 Query 203 CCGGAGACCAA-ATAGTTCAA-AAAGGATTTTGGTCCCGATTTCATCTCCTAATTTT-CC 259 |||| || ||||||| | |||| |||||||||| |||| |||||| |||| | || Sbjct 199 ----AGAC-AATATAGTTCCAGAAAG-ATTTTGGTCCAAATTTTATCTCCCAATTCTACC 252 Query 260 ATCTGCACGATGGTCAAAAGTTGCGGCGGTTGGTCCTAATATCTACT-CCATCGGCGGAT 318 ||||| | ||| | |||| | |||||||||||||||| | | |||| |||||| Sbjct 253 -TCTGC--G--GGT-A----TTGCAGTGGTTGGTCCTAATATCGA-TGCCATTGGCGGA- 300 Query 319 TGGAACATAACATGTCAAGTAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTCTC 378 |||| | || | || || || ||| ||||| ||| |||| |||||||| |||||||| Sbjct 301 -GGAATA-AAGA-GT-AA-TA---CTTTGTCTAGCGTTATGGTCATGGACTCTCGTTCTC 352 Query 379 ACACATGGTGTGAGGCCCCAAGCATGCATGTGGCCCG--TGAATTCC-ATTCTGTTTGCG 435 |||| ||| |||| || |||||||||| ||| |||| || |||| || | |||||| Sbjct 353 ACACGTGGCGTGAAGCTCCAAGCATGCGGGTGCCCCGCATG--TTCCCAT-CAGTTTGCA 409 Query 436 CCTTTGATGGGAAAATATATGTAACGGGAG-CAAACGAAAATCTTGATTCAACGAATTGG 494 || ||||||||||||||||||||| ||||| | || ||||| ||||||||||||||| Sbjct 410 CCCTTGATGGGAAAATATATGTAATGGGAGGCTGT-GATAATCTAGATTCAACGAATTGG 468 Query 495 ATGG-GTGTTTTTGATAC-AAACACCCGAACTTGGGAGTATTTACAGATCCCTGGCAAGG 552 |||| | ||||||||||| ||| || | ||||||||||| ||||||||||||| || ||| Sbjct 469 ATGGAG-GTTTTTGATACGAAA-ACTCAAACTTGGGAGTTTTTACAGATCCCTAGCGAGG 526 Query 553 AGCTATGCAGAGCCTCT-CAGTTA-GAAAGCGTATGGTATGAAGGAACCTTGTATGTGAG 610 || ||| ||| |||| | || | ||||||||| |||||||||||||| | ||||| | Sbjct 527 AGATATTTGGAGGCTCTGC-GT-ACGAAAGCGTAAGGTATGAAGGAACCGTCTATGTTTG 584 Query 611 GTCCGAGAAAAAGAATGTAACTTACAAGCTGCATAAAGGTAGATGGAGAA-AGGTAGATT 669 ||| ||||||||| |||| ||||||||||| ||| ||||||||||||| || ||| Sbjct 585 GTCTGAGAAAAAGGATGTGACTTACAAGCTACATGAAGGTAGATGGAGTGCAGC-AGAC- 642 Query 670 ATG-CTATGAATTATGGATGGGGTCG-CTCA---TCATCTTATTGTGTGATAGAGAACGT 724 ||| | |||| || |||||| | | || || |||||||||||||||||||| || Sbjct 643 ATGTCGGCGAAT---GGTTGGGGTTGGC-CAGGATCTTCTTATTGTGTGATAGAGAATGT 698 Query 725 GTTTTACCA-TAATTTTGGTACTACGATATA--TTGGTTTGACTCCCAAA-AAAGA-TCA 779 ||| ||| | | ||||| | | || | || ||||| |||| |||||| ||||| | | Sbjct 699 GTTATAC-AGTTGTTTTG-TCC-ACAAAATCCGTTGGTATGAC-CCCAAAGAAAGAGT-A 753 Query 780 TGGA 783 |||| Sbjct 754 TGGA 757 > AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:12304246-12305397 REVERSE LENGTH=1152 Length=1152 Score = 353 bits (191), Expect = 2e-96 Identities = 527/684 (77%), Gaps = 44/684 (6%) Strand=Plus/Plus Query 338 TAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTCTCACACATGGTGTGAGGCCCC 397 ||| |||| ||||| ||| ||| ||| ||| |||||||||||||||| ||| || || Sbjct 429 TAACGCTTTGTCTAGCGTTATGATTATGAACTCTCGTTCTCACACATGGCATGAAGCTCC 488 Query 398 AAGCATGCATGTGGCCCGTG-AATTCCATTCTGTTTGCGCCT-TTGATGGGAAAATATAT 455 |||||||| |||| ||||| ||||| |||| ||| || ||||||||| ||||||| Sbjct 489 AAGCATGCGGGTGGGCCGTGTGTTTCCA-TCTGCTTG-TACTCTTGATGGGAGAATATAT 546 Query 456 GTAACGGGA-GCAAACGAAAATCTTGATTCAACGAATTGGATGGGTG-TTTTTGATACAA 513 || |||||| || ||| ||||| ||| ||| ||| ||||| || | |||||||||| | Sbjct 547 GTTACGGGAGGC-TGCGACAATCTCGATACAATGAACTGGAT-GGAGATTTTTGATACGA 604 Query 514 ACACCCGAACTTGGGAGTATT-TACAGATCCCTGGCAAGGAGCTATGCAGAGCCTCTCAG 572 | || | ||||||||||| || ||||||||||| || ||||| |||||| || |||| || Sbjct 605 AGACTCAAACTTGGGAGT-TTCTACAGATCCCTAGCGAGGAGATATGCAAAGGCTCTGAG 663 Query 573 TTA-GAAAGCGTATGGTATGAAGGAACCTTGTATGTGAGGTCCGA-GAAAAAGAATGTAA 630 || ||||||| | ||| |||||||| | ||||||| ||| || ||||||| |||| | Sbjct 664 -TACTTAAGCGTAAGTTATCAAGGAACCGTCTATGTGAAGTCTGATGAAAAAG-ATGTGA 721 Query 631 CTTACAAGCTGCATAAAGGTAGATGGAGAAAGGTAGA-TTATGCTATGAATTATGGATGG 689 |||||||| |||||||||||| ||||||| ||| ||| |||| ||||||| |||||||| Sbjct 722 CTTACAAGATGCATAAAGGTAAATGGAGAGAGGCAGACATATG-TATGAATAATGGATGG 780 Query 690 -G---GTCG-C-TCATCATCTTATTGTGTGATAGAGAACGTGTTTTACCATAATTTTG-G 742 | |||| | |||||||||||||||||| ||||||||||||| |||| | | | || | Sbjct 781 AGTCTGTCGTCATCATCATCTTATTGTGTGGTAGAGAACGTGTTCTACCGTTACTGTGAG 840 Query 743 TACTACGATATATTGGTTTGACTCCCAA-AAAAGATCATGGAAAATTCTGAAGGGTTTGG 801 | |||| ||||| |||| | ||| || ||| |||||| |||| ||||||| |||| Sbjct 841 GGGGA-GATACGTTGGTATGAC-CTCAAGAATAGAGCATGGACAATTTTGAAGGGCTTGG 898 Query 802 AAAGTTTG--T-GTAAGTCT-CTT-TGCAATAAAAGCGCCAAGTACTTGGTGGATTATGG 856 ||| ||| | || | || ||| | || | ||| | || | |||| |||| |||| Sbjct 899 GAAGATTGCCTAGTTTGCCTACTTCT-CATTCAAA-TGTTAA--A-TTGGCGGATCATGG 953 Query 857 TGGGAAAATTGCGGTTT-TGTGGCAAGATTATGTGTCTCTCAAGTTCCCTAGAGAGACAT 915 ||| ||||| ||| ||| | ||| | || ||| ||| | | ||| ||| || | | Sbjct 954 TGGAAAAATGGCGATTTCT-TGGGAGGAGTATATGT-T-T---GTT-GATAGGGAAAAAA 1006 Query 916 CGATTTGGTGTGCGGAAATTGCGATTGAAAAACGCGAAAACGGCGAGATTTGGGGGATGC 975 |||||||||||||||||||||||||||||||| | |||| || || |||||||| | || Sbjct 1007 AGATTTGGTGTGCGGAAATTGCGATTGAAAAACACCAAAATGGGGAAATTTGGGGAACGC 1066 Query 976 TAGAGTGGGTTGACATTGTCTTTA 999 | |||||| |||||| ||| |||| Sbjct 1067 TTGAGTGGTTTGACAATGTGTTTA 1090 > AT4G21605.1 | Symbols: | pseudogene, hypothetical protein | chr4:11487646-11488821 FORWARD LENGTH=1176 Length=1176 Score = 348 bits (188), Expect = 7e-95 Identities = 496/637 (78%), Gaps = 52/637 (8%) Strand=Plus/Plus Query 202 GCCGGAGACCAAATAGTTCAAAAAGGATTTTGGTCCCGATTTCATCTCCTAATTTTCCAT 261 |||| | ||||||||| ||||||| |||||| |||| ||||||| |||||| || Sbjct 331 GCCGCAAACCAAATAGCTCAAAAAAGATTTTAATCCCAATTTCATATCCTAA------AT 384 Query 262 CTGCA-CGATGGTC-AAAAGT-T-GCGGCGGTTGGTCCTAATATCTACTCCATCGGCGGA 317 ||||| | |||||| | ||| | | ||| |||||||||||||||||| | || || ||| Sbjct 385 CTGCATC-ATGGTCGGATAGTGTAGTGGCTGTTGGTCCTAATATCTACGCTATTGGGGGA 443 Query 318 TT-GGAACATAACATGTCAAGTAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTC 376 || | | |||| | | || ||| ||||||||| |||||||| |||||| |||||| | Sbjct 444 TTCAGTA-ATAATA-G--AACTAAACCTTCGTCTAGCGTCATGGTCATGGATTGTCGTAC 499 Query 377 TCACACATGGTGTGAGGCCCCAAGCATGCATGTGGCCCGTGAATTCCATTCTGTTTGCG- 435 ||||||||||||||||||||| |||||||| || |||||| ||||| ||| ||||| Sbjct 500 TCACACATGGTGTGAGGCCCCTAGCATGCAGGTTTCCCGTGTGTTCCAATCTACTTGCGT 559 Query 436 CCTTTGATGGGAAAATATATGTAACGGGAG-CAAACGAAAATCTTGATTCAACGAATTGG 494 || |||||||||||||||||||||| |||| | || || ||| ||||||||||| ||| Sbjct 560 CC-TTGATGGGAAAATATATGTAACAGGAGGCCG-CGGAACTCTCGATTCAACGAAATGG 617 Query 495 ATGG-GTGTTTTTGATAC-AAACACCCGAACTTGGGAGTATTTACAGAT-CCCTG-GCAA 550 |||| | ||||||||||| ||| |||| ||||||||||| ||| || || ||| | | | Sbjct 618 ATGGAG-GTTTTTGATACGAAA-ACCCAAACTTGGGAGTTTTTGCA-ATTCCC-GAGTGA 673 Query 551 GGAGC---TATGCAGAGCCTCTCAGT-TAGAAAGCGTA-TGGTATGAAGGAACCT-TGTA 604 |||| |||||| || || | ||| | || ||| || || ||||||||||| | | || Sbjct 674 GGAGAAGATATGCACAGGCTATAAGTGT-GAGAGCATAGTG-TATGAAGGAAC-TGTCTA 730 Query 605 TGTGAGGTCCG-AGAAAAAGAATGTAACTTACAAGCTGCATAAAGGTAGATGGAGAAAGG 663 ||| ||||| | | | ||||| |||||||||||||||||||||||||||| | || Sbjct 731 TGTAAGGTC-GTATTTTCATAATGTGACTTACAAGCTGCATAAAGGTAGATGGATAGCGG 789 Query 664 TAGA-TTATGCTATGAATTATGGATGGGGTCGCTCATCATCTTATTGTGTGATAGAGAAC 722 ||| ||| || |||||| |||||||| || ||||||||| || |||||||||| ||||| Sbjct 790 CAGACTTA-GCGATGAATAATGGATGGCGTTGCTCATCATTTTTTTGTGTGATAAAGAAC 848 Query 723 GTGTTTTAC-----CA-TA-ATTTTGGTA-C--TACGATATATTGGTTTGACTCCCAAAA 772 ||||| ||| || || | | |||| | || ||| |||||| |||||| |||| Sbjct 849 GTGTTCTACTGTTGCAATAGAAGT-GGTAACGGTATGATCGATTGGTATGACTCGGAAAA 907 Query 773 AAGATCATGGAAAATTCTGAAGGGTTTGGAAAGTTTG 809 | ||||||||| || | ||||||| |||||||| ||| Sbjct 908 AGGATCATGGACAACTATGAAGGGGTTGGAAAGATTG 944 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52359168435 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5