BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926261
Length=1069
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09385.1 | Symbols: | pseudogene, hypothetical protein | ch... 451 6e-126
AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superf... 398 7e-110
AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superf... 353 2e-96
AT4G21605.1 | Symbols: | pseudogene, hypothetical protein | ch... 348 7e-95
> AT3G09385.1 | Symbols: | pseudogene, hypothetical protein |
chr3:2886535-2887714 FORWARD LENGTH=1180
Length=1180
Score = 451 bits (244), Expect = 6e-126
Identities = 681/880 (77%), Gaps = 78/880 (9%)
Strand=Plus/Plus
Query 220 CAAAAAGGATTTTGGTCCCGATTTCATCTCCTAATTTTCCATCTGCA-CGATGGTCAAAA 278
|||||| |||||||| |||||||||||||||||||||||||||||| | ||||| |
Sbjct 332 CAAAAA-AATTTTGGTTCCGATTTCATCTCCTAATTTTCCATCTGCATCC-TGGTCGGAT 389
Query 279 GTTGCGGCGGTTGGTCCTAATATCTACTCC-ATCGGCGGATTGG-AACATAACATGTCAA 336
| ||| || |||||||| ||||| | | || || || || | || |||| | ||
Sbjct 390 GCTGCAATAGTCGGTCCTAACATCTA-TGCTATTGGAGGGTTAGTAA-ATAA---G--AA 442
Query 337 GTAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTCTCACACATGGTGTGAGGCCC 396
|| |||||||| |||||||| |||||| ||| ||||||||||||| ||||||| |
Sbjct 443 TTA----TTCGTCTAGCGTCATGGTCATGGATTGTTATTCTCACACATGGCGTGAGGCAC 498
Query 397 CAAGCATGCATGTGGCCCGTGAATTCCATTCTGTTTGCG-CCTTTGATGGGAAAATATAT 455
|||| ||||||||||||||| | ||| |||||||| | || | |||||||||||||||
Sbjct 499 CAAGTATGCATGTGGCCCGTTTGTCCCACTCTGTTTGTGTCCAT-GATGGGAAAATATAT 557
Query 456 GTAACGGGAGCAAACGAAAATCTTGATTCAACGAATTGGATGG-GTGTTTTTGATACAAA 514
||||| |||| | ||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 558 GTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGGATGGAG-GTTTTTGATACGCA 616
Query 515 CACCCGAACTTGGGAGTATTTACAGATCCCTGGCAAGGAGCTATGCAGAGCCTCTCAGTT 574
|||| ||||||||||| ||| ||||||||| || ||||| ||| ||| ||| |||
Sbjct 617 GACCCAAACTTGGGAGTTTTTGCAGATCCCTAGCGAGGAGATATTTGGAGGCTCAAAGTA 676
Query 575 -AGAAAGCGTATG-GTATGAAGGAACCT-TGTATGTGAGGTCCGAGAAAAAGAATGTAAC 631
|||| ||||| | |||||||||||| | | ||||| | ||| ||| |||| |||| ||
Sbjct 677 CAGAA-GCGTA-GAGTATGAAGGAAC-TGTCTATGTAAAGTCTGAGGCAAAGGATGTGAC 733
Query 632 TTACAAGCTGCATAAAGGTAGATGGAGAA-AGGTAGAT-TATGCTATGAATTATGGATGG 689
||||||||||||||||||||||||| ||| || ||| || || || ||| | || |||
Sbjct 734 TTACAAGCTGCATAAAGGTAGATGGCGAACAGC-AGACATA-GCGATAAATAAAGGGTGG 791
Query 690 -G--GTCGCT-CATCATC---TTATTGTGTGATAGAGAACGTGTTTTACCATAATTTTGG 742
| ||| || ||| ||| |||||||||||||||||||||||| |||| | || ||
Sbjct 792 TGATGTC-CTTCATTATCCCATTATTGTGTGATAGAGAACGTGTTCTACCGTTATACTGA 850
Query 743 TACTACGATAT--ATTGGTTTGACTCCCAAAAAAGATCATGGAAAA-TTCTGAAGGGTTT 799
|| | || || | |||| ||||||| ||||||||| ||||| || || |||| ||| |
Sbjct 851 TAGAA-GA-ATCGAATGGTATGACTCCGAAAAAAGATTATGGACAACTT-TGAAAGGTGT 907
Query 800 GGAAAGTTTGTGTAAGTCTCTTTGCAATAAAAGCGCCAAGTACTTGGTGGATTATGGTGG 859
||||| ||| ||| || | ||| | | | | || |||||||| ||||||||||
Sbjct 908 GGAAAAATTGCGTA-GT-T-TTT-C--TC---GTGT-AA--ACTTGGTGAATTATGGTGG 955
Query 860 GAAAATTGCGGTTTTGT-GGCAAGATTATGTGTCTC--TCAAGTTCCCTAGAGAGACATC 916
|||||| || ||| ||| || | || ||||||| || | ||| || ||| ||
Sbjct 956 GAAAATGGCAGTTGTGTCGGTA-GAGTATGTGT-TCGGT-AAGA-----AG-GAGGCAAA 1006
Query 917 GATTTGGTGTGCGGAAATTGCGATTGAAAAACG-CGAAAACGGC-GAGATTTGGGGGATG 974
|||||||| ||||||||||||||||||||||| | ||| ||| ||||||||||| |||
Sbjct 1007 AATTTGGTGGGCGGAAATTGCGATTGAAAAACGTC-AAA-CGGGAGAGATTTGGGGAATG 1064
Query 975 CTAGAGTGGGTTGACATTGTCTTTACAACCGATAATCCA-TC-TA-A-TTTAGTGCATGC 1030
||||||||| |||||||||| |||| |||| || | | | || || | ||||| || |||
Sbjct 1065 CTAGAGTGGCTTGACATTGTGTTTAGAACCAATGA-CAAGTCATATAGTTTAGAGCGTGC 1123
Query 1031 TCTTACTACTACCGTTTGATGAATATGAGTCATGA-TCAT 1069
|||| |||||||| ||||||| ||||| |||||| ||||
Sbjct 1124 TCTTGCTACTACCATTTGATGGCTATGAATCATGACTCAT 1163
> AT4G34170.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:16368087-16369025 FORWARD LENGTH=882
Length=882
Score = 398 bits (215), Expect = 7e-110
Identities = 608/784 (78%), Gaps = 81/784 (10%)
Strand=Plus/Plus
Query 24 ACAATTCTGATGCTTCCTGATGATGTGGTATTAAACTGCTTAGCCCGCGTCTCAAGATTG 83
||||| |||||||||| ||||||| | |||||||||||||||| |||||||||||||
Sbjct 31 ACAATGCTGATGCTTCATGATGATTTAATATTAAACTGCTTAGCGCGCGTCTCAAGATCA 90
Query 84 TACTACCCAACTCTCTCCTTGGTCTCTAAGAAATTCCGTTCTCTCCTTTCTTCA-AAGGA 142
|| | ||||||||||| || || | ||||| ||| | ||||||||| ||||| | ||
Sbjct 91 AACCATCCAACTCTCTCATTAGTATGTAAGAGATTTCACTCTCTCCTTGCTTCAGTA-GA 149
Query 143 GCTTTACCAGACCCGAACCCTCTTAGGCCGCACCGAGAGTTTTCTTTATGTGTTCTTACG 202
||||||||| ||||||||||||||||||||||||||||| | || |||| ||
Sbjct 150 GCTTTACCAAACCCGAACCCTCTTAGGCCGCACCGAGAGGT--------GT-TTCT-AC- 198
Query 203 CCGGAGACCAA-ATAGTTCAA-AAAGGATTTTGGTCCCGATTTCATCTCCTAATTTT-CC 259
|||| || ||||||| | |||| |||||||||| |||| |||||| |||| | ||
Sbjct 199 ----AGAC-AATATAGTTCCAGAAAG-ATTTTGGTCCAAATTTTATCTCCCAATTCTACC 252
Query 260 ATCTGCACGATGGTCAAAAGTTGCGGCGGTTGGTCCTAATATCTACT-CCATCGGCGGAT 318
||||| | ||| | |||| | |||||||||||||||| | | |||| ||||||
Sbjct 253 -TCTGC--G--GGT-A----TTGCAGTGGTTGGTCCTAATATCGA-TGCCATTGGCGGA- 300
Query 319 TGGAACATAACATGTCAAGTAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTCTC 378
|||| | || | || || || ||| ||||| ||| |||| |||||||| ||||||||
Sbjct 301 -GGAATA-AAGA-GT-AA-TA---CTTTGTCTAGCGTTATGGTCATGGACTCTCGTTCTC 352
Query 379 ACACATGGTGTGAGGCCCCAAGCATGCATGTGGCCCG--TGAATTCC-ATTCTGTTTGCG 435
|||| ||| |||| || |||||||||| ||| |||| || |||| || | ||||||
Sbjct 353 ACACGTGGCGTGAAGCTCCAAGCATGCGGGTGCCCCGCATG--TTCCCAT-CAGTTTGCA 409
Query 436 CCTTTGATGGGAAAATATATGTAACGGGAG-CAAACGAAAATCTTGATTCAACGAATTGG 494
|| ||||||||||||||||||||| ||||| | || ||||| |||||||||||||||
Sbjct 410 CCCTTGATGGGAAAATATATGTAATGGGAGGCTGT-GATAATCTAGATTCAACGAATTGG 468
Query 495 ATGG-GTGTTTTTGATAC-AAACACCCGAACTTGGGAGTATTTACAGATCCCTGGCAAGG 552
|||| | ||||||||||| ||| || | ||||||||||| ||||||||||||| || |||
Sbjct 469 ATGGAG-GTTTTTGATACGAAA-ACTCAAACTTGGGAGTTTTTACAGATCCCTAGCGAGG 526
Query 553 AGCTATGCAGAGCCTCT-CAGTTA-GAAAGCGTATGGTATGAAGGAACCTTGTATGTGAG 610
|| ||| ||| |||| | || | ||||||||| |||||||||||||| | ||||| |
Sbjct 527 AGATATTTGGAGGCTCTGC-GT-ACGAAAGCGTAAGGTATGAAGGAACCGTCTATGTTTG 584
Query 611 GTCCGAGAAAAAGAATGTAACTTACAAGCTGCATAAAGGTAGATGGAGAA-AGGTAGATT 669
||| ||||||||| |||| ||||||||||| ||| ||||||||||||| || |||
Sbjct 585 GTCTGAGAAAAAGGATGTGACTTACAAGCTACATGAAGGTAGATGGAGTGCAGC-AGAC- 642
Query 670 ATG-CTATGAATTATGGATGGGGTCG-CTCA---TCATCTTATTGTGTGATAGAGAACGT 724
||| | |||| || |||||| | | || || |||||||||||||||||||| ||
Sbjct 643 ATGTCGGCGAAT---GGTTGGGGTTGGC-CAGGATCTTCTTATTGTGTGATAGAGAATGT 698
Query 725 GTTTTACCA-TAATTTTGGTACTACGATATA--TTGGTTTGACTCCCAAA-AAAGA-TCA 779
||| ||| | | ||||| | | || | || ||||| |||| |||||| ||||| | |
Sbjct 699 GTTATAC-AGTTGTTTTG-TCC-ACAAAATCCGTTGGTATGAC-CCCAAAGAAAGAGT-A 753
Query 780 TGGA 783
||||
Sbjct 754 TGGA 757
> AT4G23580.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:12304246-12305397 REVERSE LENGTH=1152
Length=1152
Score = 353 bits (191), Expect = 2e-96
Identities = 527/684 (77%), Gaps = 44/684 (6%)
Strand=Plus/Plus
Query 338 TAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTCTCACACATGGTGTGAGGCCCC 397
||| |||| ||||| ||| ||| ||| ||| |||||||||||||||| ||| || ||
Sbjct 429 TAACGCTTTGTCTAGCGTTATGATTATGAACTCTCGTTCTCACACATGGCATGAAGCTCC 488
Query 398 AAGCATGCATGTGGCCCGTG-AATTCCATTCTGTTTGCGCCT-TTGATGGGAAAATATAT 455
|||||||| |||| ||||| ||||| |||| ||| || ||||||||| |||||||
Sbjct 489 AAGCATGCGGGTGGGCCGTGTGTTTCCA-TCTGCTTG-TACTCTTGATGGGAGAATATAT 546
Query 456 GTAACGGGA-GCAAACGAAAATCTTGATTCAACGAATTGGATGGGTG-TTTTTGATACAA 513
|| |||||| || ||| ||||| ||| ||| ||| ||||| || | |||||||||| |
Sbjct 547 GTTACGGGAGGC-TGCGACAATCTCGATACAATGAACTGGAT-GGAGATTTTTGATACGA 604
Query 514 ACACCCGAACTTGGGAGTATT-TACAGATCCCTGGCAAGGAGCTATGCAGAGCCTCTCAG 572
| || | ||||||||||| || ||||||||||| || ||||| |||||| || |||| ||
Sbjct 605 AGACTCAAACTTGGGAGT-TTCTACAGATCCCTAGCGAGGAGATATGCAAAGGCTCTGAG 663
Query 573 TTA-GAAAGCGTATGGTATGAAGGAACCTTGTATGTGAGGTCCGA-GAAAAAGAATGTAA 630
|| ||||||| | ||| |||||||| | ||||||| ||| || ||||||| |||| |
Sbjct 664 -TACTTAAGCGTAAGTTATCAAGGAACCGTCTATGTGAAGTCTGATGAAAAAG-ATGTGA 721
Query 631 CTTACAAGCTGCATAAAGGTAGATGGAGAAAGGTAGA-TTATGCTATGAATTATGGATGG 689
|||||||| |||||||||||| ||||||| ||| ||| |||| ||||||| ||||||||
Sbjct 722 CTTACAAGATGCATAAAGGTAAATGGAGAGAGGCAGACATATG-TATGAATAATGGATGG 780
Query 690 -G---GTCG-C-TCATCATCTTATTGTGTGATAGAGAACGTGTTTTACCATAATTTTG-G 742
| |||| | |||||||||||||||||| ||||||||||||| |||| | | | || |
Sbjct 781 AGTCTGTCGTCATCATCATCTTATTGTGTGGTAGAGAACGTGTTCTACCGTTACTGTGAG 840
Query 743 TACTACGATATATTGGTTTGACTCCCAA-AAAAGATCATGGAAAATTCTGAAGGGTTTGG 801
| |||| ||||| |||| | ||| || ||| |||||| |||| ||||||| ||||
Sbjct 841 GGGGA-GATACGTTGGTATGAC-CTCAAGAATAGAGCATGGACAATTTTGAAGGGCTTGG 898
Query 802 AAAGTTTG--T-GTAAGTCT-CTT-TGCAATAAAAGCGCCAAGTACTTGGTGGATTATGG 856
||| ||| | || | || ||| | || | ||| | || | |||| |||| ||||
Sbjct 899 GAAGATTGCCTAGTTTGCCTACTTCT-CATTCAAA-TGTTAA--A-TTGGCGGATCATGG 953
Query 857 TGGGAAAATTGCGGTTT-TGTGGCAAGATTATGTGTCTCTCAAGTTCCCTAGAGAGACAT 915
||| ||||| ||| ||| | ||| | || ||| ||| | | ||| ||| || | |
Sbjct 954 TGGAAAAATGGCGATTTCT-TGGGAGGAGTATATGT-T-T---GTT-GATAGGGAAAAAA 1006
Query 916 CGATTTGGTGTGCGGAAATTGCGATTGAAAAACGCGAAAACGGCGAGATTTGGGGGATGC 975
|||||||||||||||||||||||||||||||| | |||| || || |||||||| | ||
Sbjct 1007 AGATTTGGTGTGCGGAAATTGCGATTGAAAAACACCAAAATGGGGAAATTTGGGGAACGC 1066
Query 976 TAGAGTGGGTTGACATTGTCTTTA 999
| |||||| |||||| ||| ||||
Sbjct 1067 TTGAGTGGTTTGACAATGTGTTTA 1090
> AT4G21605.1 | Symbols: | pseudogene, hypothetical protein |
chr4:11487646-11488821 FORWARD LENGTH=1176
Length=1176
Score = 348 bits (188), Expect = 7e-95
Identities = 496/637 (78%), Gaps = 52/637 (8%)
Strand=Plus/Plus
Query 202 GCCGGAGACCAAATAGTTCAAAAAGGATTTTGGTCCCGATTTCATCTCCTAATTTTCCAT 261
|||| | ||||||||| ||||||| |||||| |||| ||||||| |||||| ||
Sbjct 331 GCCGCAAACCAAATAGCTCAAAAAAGATTTTAATCCCAATTTCATATCCTAA------AT 384
Query 262 CTGCA-CGATGGTC-AAAAGT-T-GCGGCGGTTGGTCCTAATATCTACTCCATCGGCGGA 317
||||| | |||||| | ||| | | ||| |||||||||||||||||| | || || |||
Sbjct 385 CTGCATC-ATGGTCGGATAGTGTAGTGGCTGTTGGTCCTAATATCTACGCTATTGGGGGA 443
Query 318 TT-GGAACATAACATGTCAAGTAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTC 376
|| | | |||| | | || ||| ||||||||| |||||||| |||||| |||||| |
Sbjct 444 TTCAGTA-ATAATA-G--AACTAAACCTTCGTCTAGCGTCATGGTCATGGATTGTCGTAC 499
Query 377 TCACACATGGTGTGAGGCCCCAAGCATGCATGTGGCCCGTGAATTCCATTCTGTTTGCG- 435
||||||||||||||||||||| |||||||| || |||||| ||||| ||| |||||
Sbjct 500 TCACACATGGTGTGAGGCCCCTAGCATGCAGGTTTCCCGTGTGTTCCAATCTACTTGCGT 559
Query 436 CCTTTGATGGGAAAATATATGTAACGGGAG-CAAACGAAAATCTTGATTCAACGAATTGG 494
|| |||||||||||||||||||||| |||| | || || ||| ||||||||||| |||
Sbjct 560 CC-TTGATGGGAAAATATATGTAACAGGAGGCCG-CGGAACTCTCGATTCAACGAAATGG 617
Query 495 ATGG-GTGTTTTTGATAC-AAACACCCGAACTTGGGAGTATTTACAGAT-CCCTG-GCAA 550
|||| | ||||||||||| ||| |||| ||||||||||| ||| || || ||| | | |
Sbjct 618 ATGGAG-GTTTTTGATACGAAA-ACCCAAACTTGGGAGTTTTTGCA-ATTCCC-GAGTGA 673
Query 551 GGAGC---TATGCAGAGCCTCTCAGT-TAGAAAGCGTA-TGGTATGAAGGAACCT-TGTA 604
|||| |||||| || || | ||| | || ||| || || ||||||||||| | | ||
Sbjct 674 GGAGAAGATATGCACAGGCTATAAGTGT-GAGAGCATAGTG-TATGAAGGAAC-TGTCTA 730
Query 605 TGTGAGGTCCG-AGAAAAAGAATGTAACTTACAAGCTGCATAAAGGTAGATGGAGAAAGG 663
||| ||||| | | | ||||| |||||||||||||||||||||||||||| | ||
Sbjct 731 TGTAAGGTC-GTATTTTCATAATGTGACTTACAAGCTGCATAAAGGTAGATGGATAGCGG 789
Query 664 TAGA-TTATGCTATGAATTATGGATGGGGTCGCTCATCATCTTATTGTGTGATAGAGAAC 722
||| ||| || |||||| |||||||| || ||||||||| || |||||||||| |||||
Sbjct 790 CAGACTTA-GCGATGAATAATGGATGGCGTTGCTCATCATTTTTTTGTGTGATAAAGAAC 848
Query 723 GTGTTTTAC-----CA-TA-ATTTTGGTA-C--TACGATATATTGGTTTGACTCCCAAAA 772
||||| ||| || || | | |||| | || ||| |||||| |||||| ||||
Sbjct 849 GTGTTCTACTGTTGCAATAGAAGT-GGTAACGGTATGATCGATTGGTATGACTCGGAAAA 907
Query 773 AAGATCATGGAAAATTCTGAAGGGTTTGGAAAGTTTG 809
| ||||||||| || | ||||||| |||||||| |||
Sbjct 908 AGGATCATGGACAACTATGAAGGGGTTGGAAAGATTG 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52359168435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5