BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926277

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G69760.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   767    0.0  


> AT1G69760.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G26920.1); 
Has 51 Blast hits to 51 proteins in 15 species: Archae - 0; 
Bacteria - 2; Metazoa - 2; Fungi - 7; Plants - 29; Viruses 
- 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr1:26239260-26240708 
REVERSE LENGTH=1449
Length=1449

 Score =  767 bits (415),  Expect = 0.0
 Identities = 540/597 (90%), Gaps = 21/597 (4%)
 Strand=Plus/Plus

Query  1    TCTCAATCTTCCTTCTCCAAAAATGGCAGAAACAACAACAGTATCATCGCCATTGAAGCG  60
            |||| ||||| |||||||||||||||||||||||||||||||| ||||  ||||||||||
Sbjct  60   TCTCTATCTTTCTTCTCCAAAAATGGCAGAAACAACAACAGTAACATCTTCATTGAAGCG  119

Query  61   TCAAAGAGATGAGCAAGAACAAGAAATCATCATAACACAAGAAGAAACAAAAAGACAAAA  120
            |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct  120  TCAAAGAGATGAGCAAGAACAAGAAATCATCAAAACACAAGAAGAAACGAAAAGACAAAA  179

Query  121  GCCTTCTTCATCTTCTTCCTCGTACAACCAAGTTCGAACTCTCCTAGATGATATAGAAGT  180
            ||||||||||||||||||||||||||||||||||| |||||| |         |     |
Sbjct  180  GCCTTCTTCATCTTCTTCCTCGTACAACCAAGTTCTAACTCT-C---------T-----T  224

Query  181  AGTAGAAGATGAAGCTGACAATGACATAACTTCCCTAATCACCACTTTTCAGCAAGAAAT  240
            |  | |||||||||| || ||||||||||||||||||||||||||  |||||||||||||
Sbjct  225  A--A-AAGATGAAGCCGAGAATGACATAACTTCCCTAATCACCACGCTTCAGCAAGAAAT  281

Query  241  CTCTAATAAAGAACAAAACGCTGCCGTTTTTGAAGAGAACCCTTCTCTGTCTTCTTCTTG  300
             |||||| |||| ||||||||||||||||| ||||| || |||||||| |||||||||||
Sbjct  282  TTCTAATGAAGAGCAAAACGCTGCCGTTTTCGAAGAAAATCCTTCTCTCTCTTCTTCTTG  341

Query  301  CTCCTCCTCTTCGTCGTCTTCATGCACTTTTAAAGAAGATGAGTACGAAGAAGATAAAGA  360
               ||||||||| || |||||||||||||  ||||||||||||||||| | |||||||||
Sbjct  342  ---CTCCTCTTCCTCTTCTTCATGCACTTCGAAAGAAGATGAGTACGACGGAGATAAAGA  398

Query  361  GAAGGTGATGAAGCATCTTCTTGAAGCTTCTGACGACGAACTTGGGATCCCTAACACTGA  420
            ||| |||||||||||||||||||||||  ||||||||||||| || ||||||||||||||
Sbjct  399  GAAAGTGATGAAGCATCTTCTTGAAGCAACTGACGACGAACTAGGAATCCCTAACACTGA  458

Query  421  AATTGGCGGGAGTAATTATGAGATGATTAAGAGTGAGACTAATCAGGATTACGTTAATGG  480
            | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  459  ATTTGGCGGGAGTAATTATGAGATGATTAAGAGTGAGACTAGTCAGGATTACGTTAATGG  518

Query  481  GTTTAGTTTATTAGATGGGTTTGGTGTTGGGCTTTGGGAGCTTGAGGATGAAGCAGCTAA  540
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  519  GTTTAGTTTATTAGATGGGTTTAGTGTTGGGCTTTGGGAGCTTGAGGATGAAGCAGCTAA  578

Query  541  TTATTACACGTTGCTGCAATCAGAACTGTTCATGTAGGGGAGGGTAAAATAGGAAAA  597
            ||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct  579  TTATTACACGTTGCTACAATCAGAACTGTTCATGTAGAGAAGGGTAAAATAGGAAAA  635



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28733932084


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5