BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926293
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69850.1 | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transpo... 1495 0.0
AT1G27040.1 | Symbols: | Major facilitator superfamily protein... 538 7e-152
> AT1G69850.1 | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter
1:2 | chr1:26296676-26300472 REVERSE LENGTH=2092
Length=2092
Score = 1495 bits (809), Expect = 0.0
Identities = 902/947 (95%), Gaps = 6/947 (1%)
Strand=Plus/Plus
Query 6 agagagagagagagagaATGGAAGTGGAAGAAGAGGTCTCAAGATGGGAAGGCTACGCCG 65
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 AGAAAGAAAGAGAGAGAATGGAAGTGGAAGAAGAGGTCTCAAGATGGGAAGGCTACGCCG 108
Query 66 ATTGGAGAAACAGAGCCGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCGTTCG 125
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 109 ATTGGAGAAACAGAGCAGCCGTGAAAGGCCGTCACGGTGGCATGCTCGCCGCCTCTTTCG 168
Query 126 TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTCGTGC 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 169 TCTTAGTGGTGGAGATATTAGAGAATCTAGCGTATTTGGCGAATGCGAGTAATCTTGTGC 228
Query 186 TATACCTAAGAGAGTACATGCACATGTCTCCATCGAAATCGGCAAATGACGTCACCAATT 245
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 229 TATACCTAAGAGAATACATGCACATGTCTCCATCAAAATCGGCAAATGACGTCACCAATT 288
Query 246 TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TCATGGGCACAGCTTTTCTCCTAGCTCTCCTCGGTGGTTTCCTCTCCGACGCTTTCTTCT 348
Query 306 CCACTTTTCAAATCTTCCTCATCTCAGCCTCCATCGAGTTTTTGGGATTGATCATACTCA 365
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 349 CCACTTTTCAAATCTTCCTCATCTCAGCTTCCATCGAGTTTTTGGGATTGATCATACTCA 408
Query 366 CAATTCAAGCTCGTACACCGTCTTTAATGCCTCCATCGTGTGATAGTCCCACGTGTGAGG 425
||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| |
Sbjct 409 CAATTCAAGCTCGGACACCATCCTTAATGCCTCCATCGTGCGATAGTCCCACATGTGAAG 468
Query 426 AGGTGAGTGGTTCGAAGGCAGCGATGTTCTTCGTGGGATTGTACCTTGTGGCCTTGGGTG 485
| |||||||||||||||||||||||| | |||||||| ||||||||||| || |||||||
Sbjct 469 AAGTGAGTGGTTCGAAGGCAGCGATGCTATTCGTGGGGTTGTACCTTGTAGCTTTGGGTG 528
Query 486 TGGGAGGGATTAAAGGTTCATTACCATCTCATGGAGCAGAACAGTTTGATGAGAGTACAC 545
|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 529 TGGGAGGGATCAAAGGTTCATTAGCATCTCACGGAGCAGAACAGTTTGATGAGAGTACAC 588
Query 546 CTAAAGGTCGGAAACAAAGGTCGACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG 605
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 589 CTAAAGGTCGGAAACAAAGGTCAACGTTCTTTAACTACTTCGTGTTTTGTCTTGCTTGTG 648
Query 606 GAGCACTCGTAGCTGTCACGTTTGTGGTTTGGTTAGAGGACAACAAAGGATGGGAATGGG 665
||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 649 GAGCACTAGTTGCTGTCACGTTTGTAGTTTGGTTAGAAGACAACAAAGGATGGGAATGGG 708
Query 666 GATTCGGTGTTTCTACAATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA 725
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GATTCGGTGTTTCTACCATTGCTATCTTCGTCTCTATTCTCATCTTTCTCTCTGGATCAA 768
Query 726 GATTTTATAGGAACAAGATTCCATGTGGAAGCCCTCTCACCACAATCTTGAAGGTTCTTC 785
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 769 GATTTTATAGGAACAAGATTCCATGTGGAAGTCCTCTCACCACAATCTTGAAGGTTCTTC 828
Query 786 TTGCGGCCTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGTGAGTATGG 845
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 829 TTGCGGCTTCGGTTAAGTGCTGCTCGAGTGGAAGTTCAAGCAATGCGGTTGCGAGTATGT 888
Query 846 CCGTGAGTCCCTCTAATCATTGTGTACCAAAGGGGAAAAAAGAAGTTGTTGTTGAATCAC 905
||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||
Sbjct 889 CCGTGAGTCCCTCAAATCATTGCGTATCAAAGGGGAAAAAAGAAGTTG------AATCAC 942
Query 906 AAGGAGAATTGGAAAAGCCGCGTCAAGAAGAAGCCGTGCCTCCTCGG 952
||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 943 AAGGAGAATTGGAAAAGCCACGTCAAGAAGAAGCTTTGCCTCCTCGG 989
Score = 1208 bits (654), Expect = 0.0
Identities = 748/794 (94%), Gaps = 3/794 (0%)
Strand=Plus/Plus
Query 952 GATTGTTAGAATGCACAGTCCAACAAGTGCG-AGACGTGAAG-TTGTCCTGAAAATGCTT 1009
||||||||||||||||||||||||||||| | ||| |||||| ||||| |||||||||||
Sbjct 1051 GATTGTTAGAATGCACAGTCCAACAAGTG-GAAGATGTGAAGATTGTCTTGAAAATGCTT 1109
Query 1010 CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CCGATATTTGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATTCTCC 1169
Query 1070 GTCCAACAAGCTGCTTCTATGAACACAAAGATAGGAAGCCTAAAGATTCCTCCAGCTTCC 1129
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1170 GTCCAACAAGCTGCTTCCATGAACACAAAGATAGGAAGCCTAAAGATACCTCCAGCTTCC 1229
Query 1130 TTACCCATCTTCCCCGTCGTTTTCATCATGATCCTCGCACCTATCTACGACCATCTCATT 1189
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1230 TTACCGATCTTCCCCGTCGTTTTCATAATGATCCTCGCACCTATCTACGACCATCTCATT 1289
Query 1190 ATTCCATTCGCTAGAAAGGCAACCAAAACAGAAACGGGAGTAACTCATTTACAAAGAATC 1249
|| |||||||||||||| || ||||| || ||||| ||||| |||||| |||||||||||
Sbjct 1290 ATCCCATTCGCTAGAAAAGCTACCAAGACCGAAACAGGAGTCACTCATCTACAAAGAATC 1349
Query 1250 GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTGGTAGAAATCAAA 1309
||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 1350 GGAGTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTAGTTGAGATTAAA 1409
Query 1310 CGGAAGGGAGTGGCCAAAGACTCCGGCTTACTTGACTCGAAAGAAACCTTACCCGTCACT 1369
|| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1410 CGAAAGGGAGTGGCTAAAGACTCCGGCTTGCTTGACTCGAAAGAAACCTTACCCGTGACT 1469
Query 1370 TTCCTATGGATCGCGCTTCAATATCTTTTCCTAGGATCAGCTGATCTATTCACACTAGCT 1429
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1470 TTCCTATGGATCGCACTTCAGTATCTTTTCCTAGGGTCAGCCGATCTATTCACACTAGCT 1529
Query 1430 GGACTATTAGAGTATTTCTTCACGGAAGCACCTGCCTCTATGAGATCTCTAGCGACATCG 1489
|||||| |||||||||||||||||||||||||| |||| ||||||||||| || ||||||
Sbjct 1530 GGACTACTAGAGTATTTCTTCACGGAAGCACCTTCCTCAATGAGATCTCTCGCAACATCG 1589
Query 1490 CTCTCGTGGGCTTCCTTGGCAATGGGGTATTACCTAAGCTCAGTGATCGTATCCATAGTA 1549
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1590 CTCTCGTGGGCTTCTTTGGCTATGGGGTATTACCTAAGCTCAGTGATCGTGTCCATAGTA 1649
Query 1550 AACAGCATCACAGGAAGCTCAGGCAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGC 1609
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1650 AACAGCATCACAGGAAGCTCAGGGAACACACCTTGGCTCAGAGGAAAAAGCATAAACCGT 1709
Query 1610 TACAAACTTGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC 1669
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 TACAAACTAGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACTTCTTGCAC 1769
Query 1670 TATCTCTTCTGGGCAATGCGTTACAAGTATAGATCAACAGGTTCGAGAAGCTAAAATTGG 1729
|| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1770 TACCTCTTTTGGGCAATGCGTTACAAGTATAGATCAACTGGTTCAAGAAGCTAAAATTGG 1829
Query 1730 GTGGTCAACTTTTG 1743
||| |||||||||
Sbjct 1830 ATGGGCAACTTTTG 1843
> AT1G27040.1 | Symbols: | Major facilitator superfamily protein
| chr1:9386784-9390042 REVERSE LENGTH=1837
Length=1837
Score = 538 bits (291), Expect = 7e-152
Identities = 618/772 (80%), Gaps = 38/772 (5%)
Strand=Plus/Plus
Query 960 GAATGCACAGTCCAACAAGTGCG-AGACGTGAAG-TTGTCCTGAAAATGCTTCCGATATT 1017
|||||||| ||||||||||| | |||||||||| |||| || ||||||||||| |||||
Sbjct 967 GAATGCACGGTCCAACAAGT-AGAAGACGTGAAGATTGTGCTAAAAATGCTTCCAATATT 1025
Query 1018 TGCTTGCACTATCATGCTTAACTGTTGCTTAGCTCAGCTCTCTACATT-CTCCGTCCAAC 1076
|| |||||| || ||||| || || |||||||||||||| ||||| || ||| ||||| |
Sbjct 1026 TGGTTGCACCATAATGCTCAATTGCTGCTTAGCTCAGCTTTCTAC-TTACTCTGTCCACC 1084
Query 1077 AAGCTGCTTCTATGAACACAAAGATAG-GAAGCCT-AAAGATTCCTCCAGCTTCCTTACC 1134
||||||| | ||||||| |||||| | || | | || | ||||| ||||||| |||||
Sbjct 1085 AAGCTGCAACGATGAACAGAAAGATCGTTAA-CTTCAATG-TTCCTTCAGCTTCTTTACC 1142
Query 1135 CATCTTCCCCGTCGTTTTCAT-CATGATCCTCGCACCTATCTACGACCATCTCATTATTC 1193
| || || || |||||||| | |||| || || || | ||| |||||||| ||||| |
Sbjct 1143 GGTTTTTCCGGTTGTTTTCATGC-TGATTCTTGCTCCAACCTATGACCATCTGATTATCC 1201
Query 1194 CATTCGCTAGAAAGGCAACCAAAACAGAAA-CGGGAGTAACTCATTTACAAAGAATCGGA 1252
||||||| ||||| | ||||||| | |||| || | | |||||||| |||||||||||
Sbjct 1202 CATTCGCAAGAAAAGTAACCAAATCCGAAATTGGTA-TCACTCATTTGCAAAGAATCGGT 1260
Query 1253 GTAGGTTTAGTTCTTTCGATATTAGCAATGGCGGTTGCAGCTCTGGTAGAAATCAAA-CG 1311
||||| ||||| ||||||||| |||||||||| || || ||| | || | | | ||| ||
Sbjct 1261 GTAGGCTTAGTCCTTTCGATAGTAGCAATGGCAGTGGCTGCTTTAGTCG-AGTTAAAGCG 1319
Query 1312 GAAGGGAGTGGCCAAAGACTCCGGCTTACTTGACTC-GAAAGAAACCTTACCCGTCACTT 1370
|||| |||||| | ||| | || ||||||||||| | ||||||| ||||| ||||||
Sbjct 1320 GAAGCAAGTGGCTAGAGAAGCTGGATTACTTGACTCTG-AAGAAACTTTACCAATCACTT 1378
Query 1371 TCCTATGGATCGCGCTTCAATATCT-TTTCCTAGGATCAGCTGATCTATTCACACTAGCT 1429
| || ||||| || ||||| ||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 1379 TTCTGTGGATTGCTCTTCAGTATCTGTTT-CTAGGATCAGCTGATCTGTTCACACTAGCT 1437
Query 1430 GGACTATTAGAGTATTTCTTCACGGAAGCACCTGCCTCTATGAGATC-TCTAGCGACATC 1488
||| | |||||| ||||||||| ||||||||| | ||||||||||| | | || |||||
Sbjct 1438 GGATTGCTAGAGTTTTTCTTCACAGAAGCACCTTCTTCTATGAGATCAT-TGGCTACATC 1496
Query 1489 GCTCTCGTGGGCTTCCTTGGCAATGGGGTATTACCTAAGCTCAGTGATCGTATCC-ATAG 1547
|||||| |||||||| |||||| | |||||||| |||||||| ||||| || || ||||
Sbjct 1497 GCTCTCATGGGCTTCTTTGGCATTAGGGTATTATCTAAGCTCGGTGATGGT-GCCGATAG 1555
Query 1548 TAAACAGCA-TCAC-AGGAAGCT-CAGG-CAACA-CACCTTGGCTCAGAGGAAAAAGCAT 1602
| ||||| | | || | | || | | || ||| | | || ||||| || |||||| | |
Sbjct 1556 TGAACAG-AGTAACTAAG-AG-TGCTGGACAA-AGC-CCATGGCTTGGA-GAAAAA-C-T 1607
Query 1603 AAACCGCT-ACAAACTTGACTACTTCTATTGGCTAATGTGTGTTCTTAGTGCAGCTAACT 1661
||||| | ||| ||| |||| || |||||||| |||||||| || |||| | |||||
Sbjct 1608 TAACCG-TAACAGACTAGACTTGTTTTATTGGCTCATGTGTGTCCTAAGTGTTGTTAACT 1666
Query 1662 TCTTGCACTATCTCTTCTGGGCAATGCGTTACAAGTATAGATCAACAGGTTC 1713
|||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1667 TCTTGCACTATCTCTTCTGGGCAAAGCGTTACAAGTATATCTCAACTGGTTC 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5