BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926296
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69935.1 | Symbols: SHW1 | short hypocotyl in white light1 |... 926 0.0
> AT1G69935.1 | Symbols: SHW1 | short hypocotyl in white light1
| chr1:26341801-26343126 REVERSE LENGTH=894
Length=894
Score = 926 bits (501), Expect = 0.0
Identities = 581/618 (94%), Gaps = 11/618 (2%)
Strand=Plus/Plus
Query 1 TGTTAGTCTCTCTGCTCACCAATGGCCGCAGCTACAACAACAACCTTATCATCATC-T-- 57
||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| |
Sbjct 24 TGTTACTCTCTCTGCTCACAAATGGCCGCAGCT---ACAACAACCTTATCATCATCTTCA 80
Query 58 TCAT---CATCGCTAAATCTCATCAATGCCTCACACAGATTTGTCTCTGCAACTCCTTTC 114
|||| ||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 81 TCATCACCATCGCTAACTCTCATCAATGCCTCACACAGATTTGTCTCTGTAACTCCCTTC 140
Query 115 TCTTCGAACTCTATCTTCCTCCGCCGTCGTA-TCCGCCGCCTAAATCGCTCACTCGCTTC 173
||||| |||||||| ||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 141 TCTTCTAACTCTATATTCCTCCGCCGCCG-ATTCCGCCGCCTAAATCGCTCACTCGCTTC 199
Query 174 GTATAGCTCTCAGTCGCGTAGGCGATACGAAGCAGACGATCGATTCTTCGGCGGTGGTGA 233
|| |||||| || |||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 200 GTCTAGCTCCCACTCGCGTAGGCGATACGAATCAGACGATAGATTCTTCGGCGGTGGTGA 259
Query 234 CAAGTACGATGTTGTTCCTGATGACGACGGATTTAGCGACGATGATGATGAAGACGACGA 293
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 260 CAATTACGATGTTGTTCCCGATGACGACGGATTTAGCGACGATGATGATGAAGAAGACGA 319
Query 294 AAGAGAAAGCAGTGTCGATCTTTTGATTAGATTCTTGAGAAGTATGTTCAAGAAAGTCTC 353
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 320 AAGAGAAAGCAGTGTCGATCTTTTGATCAGATTCTTGAGAAGCATGTTCAAGAAAGTCTC 379
Query 354 AAAACGAGCTAAAAAAGCATCGCGACGGATTTTGCCAGCAGCCATGTCTCCTCGACTCGT 413
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 380 GAAACGAACTAAAAAAGCATCGCGACGGATTTTGCCAGCTGCCATGTCTCCTCGACTCGT 439
Query 414 GTCTTTTGCAGTAGATGGGATATTGTTATTGGGTTCACTTTCAATAACAAGAGCATTTCT 473
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 440 GTCTTTTGCAGTAGATGGGATATTGTTATTAGGTTCACTTTCCATTACAAGAGCATTTCT 499
Query 474 TGAGGTAATATGCAATCTAGGAGGAACTGTGTTTACGGTGATTCTGCTGATCCGGTTGTT 533
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 500 TGAGGTAATATGCAATCTAGGAGGAACTGTGTTTACGGTGATTCTGCTGATACGGTTGTT 559
Query 534 CTGGGCGGCAGCTTCGTTCTTCCAGACTTATGGGAACTCTTTTGGACCAAACCCGGTAAC 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 CTGGGCGGCAGCTTCGTTCTTCCAGACTTATGGGAACTCTTTTGGACCAAACCCGGTAAA 619
Query 594 TTAAAACCTTGTTTTACT 611
||||||||||||||||||
Sbjct 620 TTAAAACCTTGTTTTACT 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5