BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926304

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70020.1 | Symbols:  | Protein of unknown function (DUF1163)...   294    5e-79


> AT1G70020.1 | Symbols:  | Protein of unknown function (DUF1163) 
| chr1:26377370-26378359 FORWARD LENGTH=884
Length=884

 Score =  294 bits (159),  Expect = 5e-79
 Identities = 236/273 (86%), Gaps = 5/273 (2%)
 Strand=Plus/Plus

Query  260  TTACAATCTGATACTAGATTGGGCGCAGTTGCTTAATGTTTCATC---AATTGCTTCCGA  316
            |||||||||||||| | ||||| | ||| ||||||||   |||||   ||||||||| ||
Sbjct  399  TTACAATCTGATACCAAATTGGCCTCAGCTGCTTAATACCTCATCGGTAATTGCTTCTGA  458

Query  317  GGGAGATATGGATAGTGTGGTTATGAAAGACATTATGGAGGATATTAAGGAAAGAAGAGA  376
            |||||||||||| ||||| ||| |||||||||||||||| ||||| ||||||||||||||
Sbjct  459  GGGAGATATGGACAGTGTTGTTGTGAAAGACATTATGGACGATATAAAGGAAAGAAGAGA  518

Query  377  CATGCGGTTCGGATCGCGGTTGCTTCTTCCGGATTGCAGATCTGGGAGGACGATGAACTA  436
            |||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||
Sbjct  519  CATGCGGTTCGGATCGAGGTTGCTTCTTCCGGATTGTAGATCTGGGAGGAAGATGAACTA  578

Query  437  TACATGTGATGAATCCATG-TTGCGGTTCGAGCCTGGCACTCAAAGGAAGGCAAATGCGT  495
            ||| ||||||||| |   | || ||||| ||||||||| ||||||||||||||| |||||
Sbjct  579  TACGTGTGATGAAACTGCGGTT-CGGTTTGAGCCTGGCTCTCAAAGGAAGGCAACTGCGT  637

Query  496  TTGGAAACGACGCACCCATTTGTCACTATGTTC  528
            ||| ||||| ||| || || || |||||| |||
Sbjct  638  TTGAAAACGCCGCTCCTATATGCCACTATATTC  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26523629616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5