BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926309
Length=575
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54410.1 | Symbols: | Protein of unknown function (DUF1163)... 383 1e-105
> AT3G54410.1 | Symbols: | Protein of unknown function (DUF1163)
| chr3:20144551-20145489 FORWARD LENGTH=939
Length=939
Score = 383 bits (207), Expect = 1e-105
Identities = 414/509 (81%), Gaps = 34/509 (7%)
Strand=Plus/Plus
Query 85 CCGGTGCCAAAAGTAGAATTAGCTTCTATGGATTTCACGGTGCTTAATATCACACAAACT 144
|||| ||||||||||||||||||||||||||| |||| |||||||||||||||| | |||
Sbjct 205 CCGGCGCCAAAAGTAGAATTAGCTTCTATGGACTTCATGGTGCTTAATATCACATAGACT 264
Query 145 CGTCTTAGTGCAAAGTGGGATTTGTCCATAAGGATCCCTA-ATAATCTTCCTGGTCAGTA 203
||||||||||||||||||||||||||||||||||||||| | | |||||||||| | ||
Sbjct 265 CGTCTTAGTGCAAAGTGGGATTTGTCCATAAGGATCCCTGCAGA-TCTTCCTGGTGACTA 323
Query 204 TATATGCCTTCAAGGAGAACTT-CAAGCTTCATTTCTTTACAAAAATGCTACTCTCGCTA 262
|||||| ||||||||||| ||| |||| ||||||||||||||| |||| ||||||| ||
Sbjct 324 TATATGTCTTCAAGGAGA-CTTTCAAGTTTCATTTCTTTACAAGAATGTTACTCTCTTTA 382
Query 263 CCTCATCACCACAAAAATA--CT----ACAATCTCA-AACG-C--A-ACAA-T--CCTCA 308
||||| | |||||||| || || || || | | ||| | | || | |||||
Sbjct 383 CCTCACCTCCACAAAAGTAAGCTGTTTACTAT-TAACAACCTCCGATACCGCTGTCCTCA 441
Query 309 GCTTCTTAAGGTTTCAGCGGTTGTTTCCGAAGAAGATGTCGGCGGTTTGATTGGAAAAGA 368
||||||||| ||||| | ||||| ||||| ||| | | | || |||||||| | |
Sbjct 442 GCTTCTTAAAGTTTCTGTTGTTGTCTCCGACGAAAACATTAG---TTCGATTGGAACATA 498
Query 369 CATTATGGAAGATATCAAAGAGAAGAAGGAAGTA-CAATTCGGATCGCGGTTTTCTCTTA 427
||||||||||||| |||||||||||||| ||||| | || |||| || |||||||||||
Sbjct 499 CATTATGGAAGATGTCAAAGAGAAGAAGCAAGTAACTTTT-GGATTGCAGTTTTCTCTTA 557
Query 428 CTGATTGCAGAGAAAAGACAACAGGAATTATGAGCTATGCGTGC-GATGAAGTCACCTTG 486
| ||||||||| ||||||| |||| ||||||| ||||| ||| | || ||||||||||
Sbjct 558 CCGATTGCAGAAAAAAGACGTTAGGAGTTATGAGTTATGCATGCTG-TGGAGTCACCTTG 616
Query 487 AGGTTCGAACCTGGAT-TAGAGATGAAGGC-TACTGTGTTTGGCGACCATCCAAAGTGCA 544
||||||||||| |||| | ||||||||||| | |||||||||| | ||||||| || ||
Sbjct 617 AGGTTCGAACCCGGATCT-GAGATGAAGGCGT-CTGTGTTTGGAAAGCATCCAAGGTACA 674
Query 545 TCAACTTT-TGAACCGAGTCTACGT-AAC 571
||| ||| ||| || |||| |||| |||
Sbjct 675 -CAAATTTCTGA-CCAAGTCCACGTCAAC 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27628780850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5