BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926315

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24180.1 | Symbols: IAR4 | Thiamin diphosphate-binding fold ...   198    3e-50


> AT1G24180.1 | Symbols: IAR4 | Thiamin diphosphate-binding fold 
(THDP-binding) superfamily protein | chr1:8560525-8563495 
REVERSE LENGTH=1547
Length=1547

 Score =  198 bits (107),  Expect = 3e-50
 Identities = 151/172 (88%), Gaps = 4/172 (2%)
 Strand=Plus/Plus

Query  132   ATCCTTGAGATGGACACTTATAGGTACCACGGTCACTCAATGTCTGACCCAGGAAGCACT  191
             |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct  963   ATCCTTGAGATGGACACTTACAGATACCACGGTCACTCTATGTCTGACCCAGGAAGCACT  1022

Query  192   TACCGTACAT-GTGATGAGATCTCAGGCGTGAGGCAGGTGCGAGATCCCAAA-GATAGAG  249
             |||||||| | ||||||| ||||| |||||||| |||||||| ||||| ||  || || |
Sbjct  1023  TACCGTAC-TCGTGATGAAATCTCTGGCGTGAGACAGGTGCGTGATCC-AATTGAAAGGG  1080

Query  250   TGAGAAAGTTGATCATATCTCATGACATAGCTACTGAGAAAGAGCTCAAGGA  301
             || |||||||| || || |||||||||||||||| || |||||||| |||||
Sbjct  1081  TGCGAAAGTTGCTCTTAACTCATGACATAGCTACCGAAAAAGAGCTTAAGGA  1132



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5