BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926320
Length=382
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70120.1 | Symbols: | Protein of unknown function (DUF1163)... 305 2e-82
> AT1G70120.1 | Symbols: | Protein of unknown function (DUF1163)
| chr1:26408921-26409597 FORWARD LENGTH=582
Length=582
Score = 305 bits (165), Expect = 2e-82
Identities = 206/225 (92%), Gaps = 5/225 (2%)
Strand=Plus/Plus
Query 109 TTGCTA-CGAACCAAGAAACTTCTGT---GCCGAATATTGAAATAACTTCTATGGATTTC 164
|||||| |||||||||||||| |||| ||||||||| |||||| ||||||||||||||
Sbjct 97 TTGCTAGCGAACCAAGAAACTCCTGTCGCGCCGAATATAGAAATAGCTTCTATGGATTTC 156
Query 165 ACGGTGCATAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATAAGGGTC 224
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 ACTGTGCGTAATATTACACAAACTCGTCTCAGTGCAAATTGGGATTTATTGATAAGGGTC 216
Query 225 CCCAGTGACCTTCCTAATGCCTATATATGTCTCCAAGGAGACATTCAAGCTTCATTGTTT 284
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 CCCAGTAACCTTCCTAATGCCTATATATGTCTCCAAGGAGACATTCAAGCTTCATTGTTT 276
Query 285 TACAAAAATTTTACTCTTGTTACTTCGTCCGGACAAAGGTTATAT 329
||||| | | ||| ||||||||| || || | |||||||| ||||
Sbjct 277 TACAAGACTATTAATCTTGTTACCTCATCTGCACAAAGGT-ATAT 320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17995854142
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5