BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926322
Length=349
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70120.1 | Symbols: | Protein of unknown function (DUF1163)... 196 9e-50
> AT1G70120.1 | Symbols: | Protein of unknown function (DUF1163)
| chr1:26408921-26409597 FORWARD LENGTH=582
Length=582
Score = 196 bits (106), Expect = 9e-50
Identities = 188/226 (83%), Gaps = 11/226 (5%)
Strand=Plus/Plus
Query 109 AGAA-AAGATATATCGGTGGTTTAACTGGCGAAAA-CATTATTAAGGATATCAAAGAGAA 166
|||| ||||||| | | ||||| | | | ||||| ||||| || ||||||||||| ||
Sbjct 363 AGAAGAAGATAT-T-GACGGTTTGATTAG-GAAAAGGATTATCAAAGATATCAAAGAAAA 419
Query 167 GAGGA-AAGTGAAGTTCGGATCGCAGTTGTTTCTTACGGATTGTAGAAAATGGACGACAG 225
|| || |||||||||||||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 420 GA-GAGAAGTGAAGTTCGGATCGCAGTTGTTTCTAACGGATTGTAGAAAAGGGACCACAG 478
Query 226 GAGTTTTGAGCTATGTATGTGACGA-AACCACGTTGCGGTTCGAGCCAGATT-TGGAGAC 283
||||| ||||||||| || || | ||||| ||||||||||||||||| || || ||||
Sbjct 479 GAGTTATGAGCTATGCGTGCGAT-ATAACCATGTTGCGGTTCGAGCCAGGTTCTG-AGAC 536
Query 284 CAAGGCGACTAAGTTTGGAAACAACCCTACCTGCACTAATATTTGA 329
||||||| |||| |||||| ||||||||| ||| |||| |||||
Sbjct 537 CAAGGCGTCTAAATTTGGAGACAACCCTAGCTGTTTTAATTTTTGA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16337018425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5