BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926333
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70200.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2246 0.0
> AT1G70200.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:26432297-26434400 REVERSE LENGTH=1883
Length=1883
Score = 2246 bits (1216), Expect = 0.0
Identities = 1530/1676 (91%), Gaps = 44/1676 (3%)
Strand=Plus/Plus
Query 1 GAAAACGAAAACACAAAGCTATGAACGGAGCTACGCTCTGCAATTCCGTTTTGCTCCATT 60
||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 31 GAAAA-GAAAACACATAGCTATGAACGGAGCTTCGCTCTGCAACTCCGTTTTGCTTCATT 89
Query 61 CTCGTTTTCAGTCATCGTTTTCCTTTAAGtcttcttcttcttcttcttcttctGCATATC 120
||| || || || ||||||| | |||| || | |||||||||| ||||| ||||
Sbjct 90 CTCATTCTCTCTC-TCGTTTT-C----AGTCATC--C-TCTTCTTCTTGTTCTGTGTATC 140
Query 121 TGATTTCTCCTTCGCTTACTACATCTAAGTATACCTCAATTTCTCATAGAATTCGACAAA 180
|||||||| || ||| |||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 141 TGATTTCTTCTGCGCGTACTACGTCTAAGTATATCTCAATTTCTCATAGAATTCGACAGA 200
Query 181 GCTTTCGAGCAGTTATCGAAAAAAGAAGTAATGGGTTTTGTTTATTCGCTGTCAAA-AAG 239
||||||||| |||||| |||||||| |||||||||||||||| ||||||||| ||| |||
Sbjct 201 GCTTTCGAGAAGTTATTGAAAAAAGGAGTAATGGGTTTTGTTCATTCGCTGT-AAACAAG 259
Query 240 CGTA-ATTCTGAGCTGATGGACG--A-TGATGGag-aagaagaagaagaagaagaagatg 294
|||| | || || ||| || | || ||||| ||| || || || ||||||||||
Sbjct 260 CGTAGA-AGTG-GC-GAT-TCCGTTATTG-TGGAGTCAGACGATGATGATGAAGAAGATG 314
Query 295 atgaggattggggtgaatttgat---g-a-a-g-a--agatgaagaagatgaagatgaag 345
|||| |||||||||||||||||| | | | | | ||| |||||||| ||||||||||
Sbjct 315 ATGAAGATTGGGGTGAATTTGATGGAGAAGATGAAGGAGAAGAAGAAGAAGAAGATGAAG 374
Query 346 gagagtttttaccaatggataagatgaagaaatgGTTAGAGAAAAAGCCTCGTGGATTTG 405
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GAGAGTTCTTACCAATGGATAAGATGAAGAAATGGTTAGAGAAAAAGCCTCGTGGATTTG 434
Query 406 GGTTAGGTAAAAAGTACGAAACTTCT-ATTGAAGATAAGTTGCTCGACGAAATTCAGCAA 464
| |||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 435 GTTTAGGTAAAAAGTACGAAACTT-TAATTGAAGATAAGTTGCTCGACGAAATTGAGCAA 493
Query 465 AGCTGGAAAGCTCAAGCTGCTAATCTCAATAAGCTTAAGAATGATCCTCTCAAGTCTCAA 524
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 AGTTGGAAAGCTCAAGCTGCTAATCTCAATAAGCTTAAGAATGATCCTCTCAAGTCTCAA 553
Query 525 CAGCTTAAGCGTGACAATAATCTCATCAAAGGAACTGGAGAAACTGAAATAGGGTTTCGT 584
||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 554 CAGCTTAAGCGTGACGATAATCTCCTCAAAGGAACTGGAGAAACTCAAATTGGGTTTCGT 613
Query 585 GTTCGTGTGACTAATCTTCCTAAGAAGAAGAATGTTCATAGAGATCTTAAGGTTGCGTTT 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GTTCGTGTGACTAATCTTCCTAAGAAGAAGAATGTTCATAGAGATCTTAAGGTTGCGTTT 673
Query 645 AAAGAAGTAAGTAGCGTTTTGAGTATAACACCAGCTGTGTCTGGGAATAAAAAGACTAAG 704
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 674 AAAGAAGTAAGTGGCGTTTTGAGTATAACACCAGCTGTGTCTGGGAATAAGAAGACTAAG 733
Query 705 GACCCTGTGTGTAAGGGATTTGCTCATGTTGATTTCAAAACTGAGATTGATGCAAACAGG 764
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GATCCTGTGTGTAAAGGATTTGCTCATGTTGATTTCAAAACTGAGATTGATGCAAACAGG 793
Query 765 TTTGTGAAACAGTTCACTGGACAGAGCTTAGCATTTGGGAAGGTTATAAAGCAGATTAAA 824
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 794 TTTGTGAAACAGTTCACGGGACAGAGCTTAGCATTTGGGAAGGTTATAAAGCAAATCAAA 853
Query 825 TGTCAGGTTGTTGAGTTTACTTCAGATGAATCGGGATCGAAGGAAGTGTACTTAGATAAT 884
||||||||||| ||||||||||| ||||| || | ||||||||||||||||||||||||
Sbjct 854 TGTCAGGTTGTGGAGTTTACTTCTGATGATTCTGTATCGAAGGAAGTGTACTTAGATAAC 913
Query 885 GGTTTCAAGGTGCAGAAGCTTCCGTATTCTGGTCTTGAAGGAGATTCTATTGCTGATGTT 944
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 914 GGTTTCAAGGTGCAGAAGCTTCCGTATTCTGGTCTTGAAGGAGATTCTAGTGCTGATGTT 973
Query 945 GTTGAAGAAGAGGCTTTCTTGAGTTCAGGGGAAGAATCTGATGATTCAGAAGAAGAGCTA 1004
||||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||| ||
Sbjct 974 GTTGAAGAAGAGGTTTTGTTGGGTTCAGGGGAAGAATCGGATGATTCAGAAGAAGAGGTA 1033
Query 1005 TATGAAACG-GAAGTGGAAGAAGATGTGCGAAATCATATCTCTAGTAGCATTGAATCTCC 1063
|||||| | ||||||||||| |||| ||| |||||||||||||||||||| |||||| |
Sbjct 1034 GATGAAA-GAGAAGTGGAAGACGATGAGCGGAATCATATCTCTAGTAGCATAGAATCTTC 1092
Query 1064 TCCCGTTGAACTGAGACGTGATTTGGAA-ACCGAGTTAAAGTTTGAGAAAGAAGTTGTGA 1122
|||| ||||| ||| |||||||| | || ||| ||||||||||||||||| |||||||||
Sbjct 1093 TCCCATTGAAATGACACGTGATTCG-AATACCAAGTTAAAGTTTGAGAAACAAGTTGTGA 1151
Query 1123 AGCGAGAGATAAGAGAGCATGAGGAACTAGAGACACCTTTAGTTTCATTCCACGCGAATA 1182
|||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1152 AGCGAGAGATAAGAGAACATGAGGAACTAGAGACACCTTTAGTTTCATTCCAGGTGAATA 1211
Query 1183 AATCCGAGGAAGCTGTAGCGGAAACACGCTTGGATGATGAACAATAC-GAGGAAGCTGTA 1241
|||| |||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 1212 AATCTGAGGAAGCTGCAGCGGAAACACACTTGGATGATGAACAAT-CTGAGGAAGCTGTA 1270
Query 1242 GCAGAAACATTCTTGGATGATGAACTTGGTGGGGATGATGTAGAAGAAGTCGCTGAAGAG 1301
||||||||| ||||| |||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 1271 GCAGAAACACTCTTGAATGATGAACTTGATGGGGATGATGAAGAAGAAGTTGCTGAAGAC 1330
Query 1302 AATCTTGAACCTCTGAACAATTTATTGTCATCCTCAGAAGAAAATCGAGTAGATAGAATC 1361
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 1331 AATCTTGAACCTCTGAACAGTTCATTGTCATCCTCAGAAGAAAATAGAGTAGATAGAATC 1390
Query 1362 CGCAGGCTGGAGCAAAAGCTTCTCGGTAAAGAAAAACTCTTGGGTGGAGGAGTTGGCTTT 1421
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 CGTAGGCTAGAGCAAAAGCTTCTCGGTAAAGAAAAACTCTTGGGTGGAGGAGTTGGCTTT 1450
Query 1422 GATAAACCAGAAGCGAAACCCGCTAGAGTCgaagggaagaagaaggagaaaaagaagaag 1481
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1451 GATAAACCAGAAGCAAAACCCGCTAGAGTTGAAGGAAAGAAGAAGGAGAAAAAGAAGAAG 1510
Query 1482 acaaagattcttgtgaaagggcaagcgaaaaagagctcaaagatagaaaTCCCTGGATCT 1541
|||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||
Sbjct 1511 ACAAAGATTCTTGTGAAAGGCCAAGCCAAAAAGGGGACAAAGATAGAAATCCCTGGATCA 1570
Query 1542 TCAAAGAGATTAAAGGTGAAGGAGAAGGCTCTCTTAACCGGCGTCTTAGTCAAGTATGCG 1601
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1571 TCAAAGAGGTTAAAGGTGAAGGAGAAGGCTCTATTAACTGGCGTCTTAGTCAAGTATGCG 1630
Query 1602 GCTAAAGTTGCTTCAACCTCAAACAATGAATGA-TCGAT--CATTAACAAGTGATC 1654
||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||
Sbjct 1631 GCTAAAGTTGCTTCAACCTCAAACAATGA-TGAAT-GATATCATTAACAAGTGATC 1684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81726487260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5