BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926334
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70210.1 | Symbols: CYCD1;1, ATCYCD1;1 | CYCLIN D1;1 | chr1:... 1624 0.0
> AT1G70210.1 | Symbols: CYCD1;1, ATCYCD1;1 | CYCLIN D1;1 | chr1:26439864-26442829
FORWARD LENGTH=2020
Length=2020
Score = 1624 bits (879), Expect = 0.0
Identities = 1007/1067 (94%), Gaps = 16/1067 (1%)
Strand=Plus/Plus
Query 3 CTCCGGTTATGGGGAGAGAATGAGGAGTTACCGGTTTAGTAGTGATTGTGTACTCATGTC 62
|||||||||||||||||||||||||||||||| |||| |||||||| | ||| ||||||
Sbjct 133 CTCCGGTTATGGGGAGAGAATGAGGAGTTACC-GTTT--TAGTGATTATCTACACATGTC 189
Query 63 AGTTTCATCCTCCGATTTTTCTAACGATATGGATTTGTTATGTGGAGAAGATTCCGGTGT 122
||||||| | | |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 190 TGTTTCAT--T-C------TCTAACGATATGGATTTGTTTTGTGGAGAAGACTCCGGTGT 240
Query 123 GTTTTCCGGTGAATCAACGGTTAATTTCTCGTCTTCTGAGGTTGATTCATGGCC-GGATG 181
|||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| || ||
Sbjct 241 GTTTTCCGGTGAGTCAACGGTTGATTTCTCGTCTTCCGAGGTTGATTCATGGCCTGG-TG 299
Query 182 ATTCTATCGCTTGTTTTATCGAAGACGAGCGTCACTTTGTTCCTGGACATGATTATCTCT 241
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 ATTCTATCGCTTGTTTTATCGAAGACGAGCGTCACTTCGTTCCTGGACATGATTATCTCT 359
Query 242 CTAGATTCCAAACTCAATCTCTCGATGCTTCCGCTAGAGAAGACTCCGTCGCATGGATTC 301
||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 CTAGATTTCAAACTCGATCTCTCGATGCTTCCGCTAGAGAAGATTCCGTCGCATGGATTC 419
Query 302 TCAAGGTACAAGAGTATTATAACTTTCAGCCTTTAACGGCGTACCTCGCCGTTAACTATA 361
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCAAGGTACAAGCGTATTATAACTTTCAGCCTTTAACGGCGTACCTCGCCGTTAACTATA 479
Query 362 TGGACCGGTTTCTTTACGCTCGTCGATTACCGGAAACGAGTGGTTGGCCAATGCAACTTT 421
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGGATCGGTTTCTTTACGCTCGTCGATTACCGGAAACGAGTGGTTGGCCAATGCAACTTT 539
Query 422 TAGCAGTGGCATGCTTGTCTTTAGCTGCAAAGATGGAGGAAATTCTCGTTCCTTCTCTTT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAGCAGTGGCATGCTTGTCTTTAGCTGCAAAGATGGAGGAAATTCTCGTTCCTTCTCTTT 599
Query 482 TCGATTTTCAGGTTGCAGGAGTGAAGTATATATTTGAAGCAAAAACGATAAAGAGAATGG 541
| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 600 TTGATTTTCAGGTTGCAGGAGTGAAGTATTTATTTGAAGCAAAAACTATAAAAAGAATGG 659
Query 542 AACTTCTTGTTCTAAGTGTGTTAGATTGGAGACTAAGATCCGTTACACCGTTTGATTTCC 601
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 AACTTCTTGTTCTAAGTGTGTTAGATTGGAGACTAAGATCGGTTACACCGTTTGATTTCA 719
Query 602 TTAGCTTCTTTGCTTACAAGATCGATCCTTCGGGAACCTTTCTCGGGTTCTTTATCTCCC 661
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 720 TTAGCTTCTTTGCTTACAAGATCGATCCTTCGGGTACCTTTCTCGGGTTCTTTATCTCCC 779
Query 662 ATGCTACAGAGATTATACTCTCCAACATAAAAGAAGCGAGCTTTCTTGAGTACTGGCCAT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATGCTACAGAGATTATACTCTCCAACATAAAAGAAGCGAGCTTTCTTGAGTACTGGCCAT 839
Query 722 CGAGTATAGCTGCAGCTGCGATTCTCTGTGTTGCCAATGAGCTCCCTTCTCTGTCCTCTG 781
|||||||||||||||| |||||||||||||| || || ||| | |||||||| |||||||
Sbjct 840 CGAGTATAGCTGCAGCCGCGATTCTCTGTGTAGCGAACGAGTTACCTTCTCTATCCTCTG 899
Query 782 TTGTAAATCCCCACGAGAGCCCTGAGACTTGGTGTGACGGATTGAGCAAAGAGAAGATAG 841
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTGTCAATCCCCACGAGAGCCCTGAGACTTGGTGTGACGGATTGAGCAAAGAGAAGATAG 959
Query 842 TGAGATGCTATAGACTGATGAAAGCGATGGCGATAGAGAATAATCGGTTAAATACACCAA 901
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 960 TGAGATGCTATAGACTGATGAAAGCGATGGCCATCGAGAATAACCGGTTAAATACACCAA 1019
Query 902 AAGTGATAACAAAGCTTCGAGTAAGCGTAAGGGCAGCATCAACGTTAACAAGGCCAAGTG 961
|||||||| ||||||||||||| || ||||||||| |||| |||||||||||||||||||
Sbjct 1020 AAGTGATAGCAAAGCTTCGAGTGAGTGTAAGGGCATCATCGACGTTAACAAGGCCAAGTG 1079
Query 962 ATGAATCCTCTTTCTCGTCATCATCTCCTTGTAAAAGGAGAAAACTAAGTGGCTATTCGT 1021
|||||||||||||||| || || ||||||||||||||||||||| ||||||||||||| |
Sbjct 1080 ATGAATCCTCTTTCTCATCCTCTTCTCCTTGTAAAAGGAGAAAATTAAGTGGCTATTCAT 1139
Query 1022 GGGTAGGTGATGAAA-ATTCTACCTCTAATTAAAATGTGGGGAGTGA 1067
||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1140 GGGTAGGTGATGAAACAT-CTACCTCTAATTAAAATTTGGGGAGTGA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5