BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926338
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70260.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1803 0.0
> AT1G70260.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:26456844-26459450 REVERSE LENGTH=1463
Length=1463
Score = 1803 bits (976), Expect = 0.0
Identities = 1097/1157 (95%), Gaps = 2/1157 (0%)
Strand=Plus/Plus
Query 9 AGAGGGAGAGAGATGGAGGTGAAGGTTAGAAGAAATGAGTTGGTACCTTTTGTAGCAATG 68
||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 101 AGAGGGAGATAGATGGAGGTGAAGGTTAGAAGAGATGAGTTGGTACCCTTTGTAGCAATG 160
Query 69 GCGATAATGGAAGCGTGCACGATTGCTCTAACGATAATGGCCAAAACGGCGTTGACGGGA 128
|| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 161 GCTATAATGGAAGCATGCACGATTGCTCTTACGATAATGGCGAAAACGGCGTTGACGGGA 220
Query 129 GGGATGAGTCCTTTTGTGTTCGTTGTTTACACAAACGCTTTTGGATCTAttcttcttctt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GGGATGAGTCCTTTTGTGTTCGTTGTTTACACAAACGCTTTTGGATCTATTCTTCTTCTT 280
Query 189 ccattttctttcttcttcCACAGGAATGAGAGAACAGAACAATCTATCTTCTCTTGGCCA 248
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CCATTTTCTTTCTTATTTCACAGGAATGAGAGAACAGAACAATCTATCTTCTCTTGGCCA 340
Query 249 CTCCTCGTTCGTGTTTTCTTTCTAGGTTTCACCGGGATATTTATGTTCCAAAACTTGGCA 308
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CTCCTCGTTCGCGTTTTCTTTCTAGGTTTCACCGGGATATTTATGTTCCAAAACTTGGCA 400
Query 309 TTTGTGGGACTAAGGTTCAGCTCACCAATAGTCGTATGTGCAATGGGACTGCAAATCCCT 368
|||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 401 TTTGTGGGACTACGCTTCAGCTCACCAATAGTAGTATGTGCAATGGGATTGCAAATCCCG 460
Query 369 TCCTTTTCCTTCTTGCTCTCTATTCTTCTCGGAAAGAGCAAGTTGGATTGGAGAAACACG 428
||||| |||||| ||||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct 461 TCCTTCTCCTTCCTGCTCTCTATTATTCTCGGAAGGAGCAAATTGGATTGGAGAAACACG 520
Query 429 AGCACGAGGGCTAAACTGATGGGAACAATAATCTCATTAAGCGGAGCATTTGTTGAAGAG 488
|| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 521 AGTACGAGGGCTAAACTGATGGGAACAATAGTCTCGTTAAGCGGAGCTTTTGTTGAAGAG 580
Query 489 TTGTACAAAGGTCCTTTCATAAGACCAGCTTCGTCTGCTTCCCCAACTCGTTTTCTTAAA 548
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 581 TTGTACAAAGGTCCATTCATAAGACCAGCTTCGTCTGCTTCCCCAAATCGTTTTCTTAAA 640
Query 549 TCGGTCCCTAAACTTTTGGTCTACTACAACCTCCCCGACAATTGGTTTCTTGGCTGTATC 608
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 641 TCAGTCCCTAAACTTTTGGTCTACTACAACCTCCCCGACAATTGGTTTCTCGGCTGTATC 700
Query 609 TTTTTGGCGG-CTGCGGTTTTCTCTGTCTCCCTCTTCAATGTTATTCAGACAGGGACGGT 667
|||||||| | | || ||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 701 TTTTTGGCCGTC-GCTGTTTTTTCTGTCTCCCTGTTCAATGTTGTTCAGACAGGGACGGT 759
Query 668 AAAACAGTATCCACATGTGATGAAAGTGGCTTCGTTTTACAGTATAGTCGGGACGATCCA 727
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 760 AAAAAAGTATCCACATGTGATGAAAGTGGCTTCGTTTTACAGCATAGTCGGGACGATCCA 819
Query 728 ATGTCTAATATTCTCGTTATTTATGGAGAGCGACCTAAGTGCATGGAAGATCCAACCTAA 787
||||||| ||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 820 ATGTCTACTATTCTCGTTATTTATGGAAAGAGACCTTAGTGCATGGAAGATCCAACCTAA 879
Query 788 CTTCGATCTTTATCTCATTATCGCCACGGGAACATTCGGAAGTGTGATACGAACAAGCGT 847
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 880 CTTCGATCTTTATCTCATTATCGCCACGGGAACATTCGGAAGTGTAATACGAACAAGTGT 939
Query 848 ACACGTAAAGTGCACTAAAATGAAAGGACCTTATTACGTGCCATTATTCAAACCCTTTGG 907
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 940 ACACGTAAAGTGCACCCAAATGAAAGGACCTTATTACGTGCCATTGTTCAAACCCTTTGG 999
Query 908 TATCTTTTGGGCTACACTCTTTGGCACCAGCTTCTTCGTCAACAGTCTTCACTACGGCAG 967
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1000 TATCTTTTGGGCAACACTCTTTGGTACCAGCTTCTTCGTCAACAGTCTTCACTACGGCAG 1059
Query 968 TGTGTTAGGAGCAGCCATAGCTGGTGTGGGATATTACACAGTGTCTTGGGGACAACTgaa 1027
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1060 TGTGTTAGGAGCAGCCATAGCTGGTGTGGGATATTTCACAGTGTCTTGGGGACAATTGAA 1119
Query 1028 agaaagcgaagaaaaacaaaatccaaatgaagaaagaaaatccatcaaaaCTATTCATCA 1087
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1120 GGAAAGCGAAGAAAAACAAAGTTCAAATGAAGAAAGAAAATCCATCAAAACTATTCATCA 1179
Query 1088 TTGCCAAGAAGATGAACACAAAGTTCCATTGCTTATTAATCAGGAAGAAAGTCCTGTGTG 1147
| || | ||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 1180 TCGCGATGAAGATGAATACAAAGTTCCATTACTTATTAACCAGGAAGAAAGTCCTGTATG 1239
Query 1148 AATTTTGTATTATATAT 1164
|||||||||||||||||
Sbjct 1240 AATTTTGTATTATATAT 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57329022390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5