BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926343
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70300.1 | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477... 3565 0.0
> AT1G70300.1 | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477880-26481630
REVERSE LENGTH=2859
Length=2859
Score = 3565 bits (1930), Expect = 0.0
Identities = 2243/2396 (94%), Gaps = 13/2396 (1%)
Strand=Plus/Plus
Query 5 TTTTCACAAAAACCCACCATGGAAATCGAATCTGGAAGTTATCAAAACATTGCCAAGAAG 64
||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 380 TTTTCACAAAAGCCCACCATGGAAATCGAATCAGGAAGTTATCAAAAC---GCCAAGAAG 436
Query 65 GAATCGTGGAGAACAGTGTTGACATTAGCGTATCAAAGCTTAGGTGTTGTATATGGAGAT 124
||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 437 GAATCATGGAGAACAGTATTAACATTAGCGTATCAAAGCTTAGGTGTTGTATACGGAGAC 496
Query 125 TTGAGTATTTCTCCTTTATATGTATACAAAAGCACATTCGCTGAAGACATTCGTCACTCT 184
||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 497 TTGAGTATTTCACCTCTATATGTATACAAAAGCACATTCGCTGAAGACATTCATCACTCT 556
Query 185 GAGTCCAATGAAGAGATCTTTGGTGTTTTGTCTTTCATCTTTTGGACAATCACTCTTGTC 244
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GAATCCAACGAAGAGATCTTTGGTGTTTTGTCTTTCATCTTTTGGACAATCACTCTTGTC 616
Query 245 CCTCTTCTCAAATACGTTTTCATAGTTCTTAGAGCAGATGATAATGGTGAAGGAGGCACT 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CCTCTTCTTAAATACGTTTTCATAGTTCTTAGAGCAGATGATAATGGTGAAGGAGGCACT 676
Query 305 TTTGCTCTTTACTCTCTTCTATGTCGACACGCACGAGTCAACTCGTTACCGAGTTGTCAA 364
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TTTGCTCTTTACTCGCTTTTATGTCGACACGCACGAGTCAACTCGTTACCGAGTTGTCAA 736
Query 365 TTGGCTGATGAGCAGCTTATAGAGTATAAGACTGACTCGATTGGGTCGTCGTCGTCGATG 424
|||||||||||||||||||| |||||||||||||| || ||| ||| ||||| ||||||
Sbjct 737 TTGGCTGATGAGCAGCTTATTGAGTATAAGACTGATTCAATT-GGT--TCGTCTTCGATG 793
Query 425 CCTCAATCGGGTTTTGCAGCGAGTTTGAAATCTACCCTTGAGAAACATGGAGTGTTGCAG 484
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 794 CCTCAATCTGGTTTTGCAGCGAGTTTGAAATCTACTCTTGAGAAACATGGAGTTTTGCAG 853
Query 485 AAGATTTTGCTTGTTCTTGCTTTGATTGGGACTTGTATGGTGATTGGTGATGGTGTTCTT 544
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 854 AAGATTTTGCTTGTTCTTGCTTTGATTGGGACTTGTATGGTTATTGGTGATGGTGTTCTC 913
Query 545 ACGCCTGCGATTTCAGTTTTTTCTGCAGTATCTGGTGTTGAGCTTTCAATGTCTAAGGAG 604
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 ACGCCTGCTATTTCAGTTTTTTCTGCAGTATCTGGTGTTGAGCTTTCAATGTCTAAGGAG 973
Query 605 CATCACAAGTACATAGAACTCCCTGCTGCTTGTATAATTCTGATAGGGTTGTTTGCACTC 664
||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 974 CATCACAAGTATATAGAACTCCCTGCTGCTTGTGTAATTCTGATAGGTTTGTTTGCACTT 1033
Query 665 CAGCACTACGGTACACATAGGGCCGGGTTCTTGTTCGCACCGGTGATTCTGTTGTGGCTA 724
||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1034 CAGCACTACGGTACACACAGGGTCGGGTTCTTGTTCGCCCCGGTGATTCTGTTGTGGCTA 1093
Query 725 ATGTGCATCAGCGCCATCGGTGTTTACAACATTTTCCATTGGAATCCGCATGTCTATCAA 784
||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 1094 ATGTGTATCAGCGCCATCGGTGTTTACAACATTTTCCATTGGAACCCGCATGTGTACCAA 1153
Query 785 GCACTTTCTCCCTATTATATGTACAAGTTCCTCAAGAAAACTCAAAGTAAAGGCTGGATG 844
||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1154 GCACTTTCTCCTTATTACATGTACAAGTTCCTCAAGAAAACTCAAAGTAGAGGCTGGATG 1213
Query 845 TCTCTTGGTGGGATCTTGCTCTGCATTACAGGTTCCGAAGCAATGTTTGCGGATCTAGGA 904
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TCTCTTGGTGGTATCTTACTCTGCATTACAGGTTCCGAAGCAATGTTTGCGGATCTAGGA 1273
Query 905 CATTTTTCTCAACTATCAATCAAGATTGCTTTTACGTCACTTGTTTACCCGTCCTTGATA 964
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 CATTTTTCTCAACTCTCAATCAAGATTGCTTTTACGTCACTTGTTTACCCGTCCTTGATA 1333
Query 965 CTCGCCTACATGGGACAAGCAGCTTATCTCTCTCAGCATCATGTTATCGAAAGCGAATAC 1024
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1334 CTCGCCTACATGGGACAAGCAGCTTATCTCTCTCAGCATCATATTATTGAAAGCGAATAC 1393
Query 1025 AATATCGGGTTTTATGTATCTGTACCAGAAAAACTAAGATGGCCAGTTCTTGTGATCGCC 1084
|||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1394 AATATCGGGTTTTATGTATCGGTACCAGAAAGATTAAGATGGCCAGTTCTTGTGATCGCT 1453
Query 1085 ATACTTGCTGCTGTAGTTGGAAGTCAAGCCATTATAACTGGAACATTCTCTATCATCAAA 1144
||||| ||||||||||||||||||||||| || || || ||||||||||| |||||||||
Sbjct 1454 ATACTCGCTGCTGTAGTTGGAAGTCAAGCAATCATCACAGGAACATTCTCGATCATCAAA 1513
Query 1145 CAATGCTCTGCATTGGGATGCTTCCCCAAAGTGAAGATTGTTCATACGTCATCCAAAATT 1204
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1514 CAATGCTCTGCATTGGGATGCTTCCCTAAAGTGAAGATTGTTCATACGTCATCCAAAATC 1573
Query 1205 CACGGTCAGATTTACATCCCTGAGATCAATTGGATCTTGATGATCCTCTGTTTAGCTGTA 1264
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1574 CACGGTCAGATTTACATCCCTGAGATCAATTGGATCTTGATGGTTCTCTGTTTAGCTGTC 1633
Query 1265 ACCATTGGCTTCAGAGACACCAAGCGGTTGGGTAATGCTTCAGGCTTGGCGGTTATAACC 1324
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1634 ACCATTGGCTTCAGAGACACCAAGCGGTTGGGTAATGCTTCAGGATTGGCGGTTATAACT 1693
Query 1325 GTTATGCTTGTGACGACGTGCCTAATGTCACTAGTGATCGTACTCTGCTGGCACAAGAGC 1384
|||||||| ||||| || ||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 1694 GTTATGCTGGTGACAACATGCTTAATGTCACTAGTGATTGTACTTTGCTGGCACAAGAGT 1753
Query 1385 GTCCTCTTGGCAATCGCATTTGTTGTATTCTTTGGCACGATCGAAGCTCTCTACTTCTCA 1444
||| |||| ||||||| ||| ||||||||||| ||||| |||||| |||||||||||||
Sbjct 1754 GTCATCTTTGCAATCGTATTCGTTGTATTCTTCGGCACAATCGAATCTCTCTACTTCTCT 1813
Query 1445 GCTTCCCTAATCAAATTTCTCGAAGGCGCGTGGGTCCCAATCGCCCTCGCTTTTTGCTTC 1504
|||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1814 GCTTCCTTAATCAAATTCCTCGAAGGCGCATGGGTTCCAATCGCCCTCGCTTTTTGCTTC 1873
Query 1505 CTTCTTGCAATGTGCACTTGGCATTACGGAACCCTCAAGCGCTATGAGTACGATGTACAA 1564
||||| || ||||| |||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1874 CTTCTCGCGATGTGTACTTGGCACTACGGAACACTCAAGCGCTATGAGTACGATGTGCAA 1933
Query 1565 AACAAAGTCTCGGTCAACTGGCTCCTCAGCCTCAGTCAAACCCTCGGGATCGCACGTGTC 1624
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1934 AACAAAGTCTCGGTCAACTGGCTCCTCAGTCTTAGTCAAACCCTCGGGATCGCACGTGTC 1993
Query 1625 CGTGGCCTCGGACTCATCCACACCGAGCTTGTATCTGGTGTCCCCGCAATATTCTCTCAT 1684
|||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1994 CGTGGCCTTGGACTCATCCACACCGAGCTCGTCTCTGGTGTCCCCGCGATATTCTCTCAT 2053
Query 1685 TTTGTCACCAACCTCCCTGCCTTCCACCAGGTTCTCGTCTTTCTCTGTGTCAAATCCGTC 1744
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2054 TTTGTCACCAACCTCCCTGCCTTCCACCAGGTTCTCGTCTTCCTCTGTGTCAAATCTGTT 2113
Query 1745 CCGGTTCCACACGTCCGACC-CGAGGAACGGTTTCTAGTCGGACGTATCGACCCAAAAGA 1803
|||||||| || || || || | |||||||||||||||| ||||| |||| ||||||||
Sbjct 2114 CCGGTTCCGCATGTTCGTCCTC-AGGAACGGTTTCTAGTAGGACGCATCGGGCCAAAAGA 2172
Query 1804 GTTCCGAATCTACCGTTGCATTGTCAGGTTCGGGTACCGCGATGTCCACAAAGACGATTT 1863
|||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 2173 GTTCCGCATATACCGTTGCATTGTCCGGTTCGGGTACCGTGATGTCCACAAAGACGATTT 2232
Query 1864 CGAGTTTGAAGGCGATCTTGTATGTAGCATTGCGGAGTTTATCCGTACTGAAGCTGCAAC 1923
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2233 CGAGTTTGAAGGCGATCTTGTATGTAGCATTGCCGAGTTTATCCGTACTGAAGCTGAAAC 2292
Query 1924 CGC-G--ACCGCTGCAGAGACCAACGGAGAGGATGATGATAGAATGTCGGTAGTCGGAAC 1980
||| | ||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 2293 CGCCGCCACCGCTGCAGAGACCAACGGAGAGGATGATGATAGAATGTCAGTAGTAGGTAC 2352
Query 1981 TTGTTCTACATACATGCAAGGAATCGAGGATCATTACGAAAGCGATCTTGACGACCCTAA 2040
|||||| ||||||||||||||||| |||||||| |||||||||||| |||| |||||| |
Sbjct 2353 TTGTTCCACATACATGCAAGGAATTGAGGATCACTACGAAAGCGATATTGATGACCCTGA 2412
Query 2041 TAAGCCCGGGACGTCAGAGATCCGATCACCAAAACCAAAGAAGAAGAGTAAGAGTAAGAT 2100
||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 2413 TAAACCAGGGACGTCAGAGATTCGATCACCAAAACCAAAGAAAAAGAGTAAGAGTAAGGT 2472
Query 2101 CAAAAAGAGGGTAAGGTTTGTTGTCCCGGAGACTCCAAAGATAGAGAAGGAAACTAGGCA 2160
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2473 CAAAAAGAGAGTGAGGTTTGTTGTCCCGGAGACTCCAAAGATAGAAAAGGAAACTAGGCA 2532
Query 2161 GGAGTTAATGGAGCTAACGGAGGCGCGTGAGGGAGGCGTGGCTTATATAATGGGAAACGC 2220
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 2533 AGAGTTAATGGAGCTAACAGAGGCACGAGAGGGAGGCGTGGCTTATATAATGGGAAACGC 2592
Query 2221 GTATATGAAAGCGAAGCAAGGATCAGGATTAGTAAAGAGACTCGCCATTAACATTGGCTA 2280
|||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2593 TTATATGAAAGCGAAGCCAGGATCAGGATTACTCAAGAGACTCGCCATTAACATTGGCTA 2652
Query 2281 CGAGTTTCTTAGGAGGAACACTAGAGGTCCTAGAAACATGCTTACTTCGCCTAACGCTTC 2340
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2653 CGAGTTTCTTAGGAGGAACACTAGAGGTCCTAGAAACATGCTTACCTCGCCTCACGCTTC 2712
Query 2341 TACTTTAGAAGTCGGTATGATCTACCATGTCTAAAGGGG--TAGTTTGGTATTTTT 2394
|||||||||||||||||||||||| ||||||||||||| || |||||| |||||
Sbjct 2713 TACTTTAGAAGTCGGTATGATCTATAATGTCTAAAGGGGGGTATTTTGGTCTTTTT 2768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118874890560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5