BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926346
Length=526
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59930.1 | Symbols: | MADS-box family protein | chr1:220610... 283 1e-75
AT1G59920.1 | Symbols: | MADS-box family protein | chr1:220594... 283 1e-75
> AT1G59930.1 | Symbols: | MADS-box family protein | chr1:22061083-22061481
REVERSE LENGTH=399
Length=399
Score = 283 bits (153), Expect = 1e-75
Identities = 218/250 (87%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 246 ATGGATCAAGAGGCCTTATTGCGTGAGAGGATCGAAAAAGAACAAATGGAATTGAAAAAA 305
|||||||||||||| || |||||||||||||| ||||||| |||| | ||||| ||||
Sbjct 1 ATGGATCAAGAGGCTTTTTTGCGTGAGAGGATTGAAAAAGCACAAGCGCAATTGCAAAAG 60
Query 306 TTGCGCGATGAGAATCGAGATTTGAAAGCTCGGCAAATTATGTGGGG-TGTTCTCGGAGG 364
|||| ||||| ||||||| ||||| ||||| |||||||||||||| || | ||| |||
Sbjct 61 CTGCGTGATGAAAATCGAGTTTTGAGGGCTCGACAAATTATGTGGGGTTG-TATCGAAGG 119
Query 365 AAATATTGATGTGCATCAACTCGGTGAAAAAGATCTTCAAGATTTGAGTTCTGTTATTGA 424
|| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 AACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCAAGATTTGAGTTCTGTTATTGA 179
Query 425 TAACTATCTCAATAGCGTTACTAGCAGGATTGAGGACCTTAAAAAGAATGGTGAGTCTTC 484
| |||||||| ||||| ||| |||||||||||| ||||||| |||||||||||| ||||
Sbjct 180 TGACTATCTCGATAGCCTTAAAAGCAGGATTGAGTACCTTAAGAAGAATGGTGAGCCTTC 239
Query 485 TTCTTCTTTA 494
||||||||||
Sbjct 240 TTCTTCTTTA 249
> AT1G59920.1 | Symbols: | MADS-box family protein | chr1:22059424-22059822
REVERSE LENGTH=399
Length=399
Score = 283 bits (153), Expect = 1e-75
Identities = 218/250 (87%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 246 ATGGATCAAGAGGCCTTATTGCGTGAGAGGATCGAAAAAGAACAAATGGAATTGAAAAAA 305
|||||||||||||| || |||||||||||||| ||||||| |||| | ||||| ||||
Sbjct 1 ATGGATCAAGAGGCTTTTTTGCGTGAGAGGATTGAAAAAGCACAAGCGCAATTGCAAAAG 60
Query 306 TTGCGCGATGAGAATCGAGATTTGAAAGCTCGGCAAATTATGTGGGG-TGTTCTCGGAGG 364
|||| ||||| ||||||| ||||| ||||| |||||||||||||| || | ||| |||
Sbjct 61 CTGCGTGATGAAAATCGAGTTTTGAGGGCTCGACAAATTATGTGGGGTTG-TATCGAAGG 119
Query 365 AAATATTGATGTGCATCAACTCGGTGAAAAAGATCTTCAAGATTTGAGTTCTGTTATTGA 424
|| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 AACTATTGATGTGTGTCAACTCGGTGAAAAGGATCTTCAAGATTTGAGTTCTGTTATTGA 179
Query 425 TAACTATCTCAATAGCGTTACTAGCAGGATTGAGGACCTTAAAAAGAATGGTGAGTCTTC 484
| |||||||| ||||| ||| |||||||||||| ||||||| |||||||||||| ||||
Sbjct 180 TGACTATCTCGATAGCCTTAAAAGCAGGATTGAGTACCTTAAGAAGAATGGTGAGCCTTC 239
Query 485 TTCTTCTTTA 494
||||||||||
Sbjct 240 TTCTTCTTTA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25167307647
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5