BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926353
Length=1921
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70370.1 | Symbols: PG2 | polygalacturonase 2 | chr1:2651272... 2981 0.0
> AT1G70370.1 | Symbols: PG2 | polygalacturonase 2 | chr1:26512722-26515188
REVERSE LENGTH=2352
Length=2352
Score = 2981 bits (1614), Expect = 0.0
Identities = 1809/1904 (95%), Gaps = 9/1904 (0%)
Strand=Plus/Plus
Query 5 AGAAGAAAGAACAAAAATGCTCAAACAGTTTCTTCTTCTCCAATCCTTCTCCTTCTTCCT 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 AGAAG-AAGAACAAAAATGCTCAAACAGTTTCTTCTTCTCCAATCCTTCTCCTTCTTCCT 234
Query 65 CTTCAATGTTGTTATCGTCGGAGGAAAGTTA-A-TCGGCGGCGGTTTCTCAGCGGAGGAG 122
||||||||| |||||||||||||| ||| | | ||||||||||||||||||||||||||
Sbjct 235 CTTCAATGTAGTTATCGTCGGAGG-AAG-AACATTCGGCGGCGGTTTCTCAGCGGAGGAG 292
Query 123 AATCCATTTACTCCAAAAGCATCTTTGGTTCGTTACTGGAACAAAGAGATCCGTGGAGAA 182
|||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||
Sbjct 293 AATCCATTTACTCCAAAAGCATCTCTAGTTCGTTACTGGAACAAAGAGATTCGTGGCCAA 352
Query 183 TCTCCCAGATCGGAGTTTTTAATCTCTAAAGCGTCGCCACTCAACGCCGTAGACTCAGCA 242
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 353 TCTCCCAGATCGGAGTTTTTAATCTCAAAAGCTTCACCACTCAACGCCGTAGACTCAGCA 412
Query 243 ACTTTCTCAAAACTCGCCGCCGCGAACTCGCTCCCGACTCGTTTTCCTGATTTCTGCTCC 302
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 413 ACTTTCTCAAAACTCGCCGCCGCGAACTCGCTGCCGACTCGTTTTCCCGATTTCTGCTCC 472
Query 303 GTCGCGAATCTCTTCTGTTTTCCCGATTTAGGAGCGAGTCTCGAGAAACACGACGACGAC 362
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 473 GCCGCGAATCTCTTCTGTTTTCCTGATTTAGGAGCGAGTCTCGAGAAACACGACGACGAC 532
Query 363 GTTAAATTCTCTGTCTATGACCAGAAGAACTTCACTAACTACGGCAATGCTCGTGCCGGA 422
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GTTAAATTCTCCGTTTATGACCAGAAGAACTTCACTAACTACGGCAATGCTCGTGCCGGA 592
Query 423 GGAGCAGATTCGTTCAAAAACTACTC-AAGAGACGGCAATGTTGTAACCGATTCGTTCCG 481
|||||||||||||||||||||||||| || |||||| ||||| |||||||||||||||||
Sbjct 593 GGAGCAGATTCGTTCAAAAACTACTCGAA-AGACGGTAATGTCGTAACCGATTCGTTCCG 651
Query 482 GAGGTACAGTCGTAACGCGGCGGGTCACGACGATAAATTCACCGTGTACGGCGATAACAG 541
||| ||||| |||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 652 GAGATACAGCCGTAACGCGGCGGGTCACGACGATAAATTCACTGTCTACGGTGAAAACAG 711
Query 542 TAACGTCGTCGAGGAAGGATTCAATTCATACGGAACATTCGGAACCGGCGGCGCCGGAGT 601
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TAACGTGGTAGAGGAAGGATTCAATTCATACGGAACATTCGGAACCGGCGGCGCCGGAGA 771
Query 602 TTTCACTAACTACCAAAACAACGTGAACAATCCGACGAGTCGATTCACGGCGTATTCTGA 661
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 772 TTTCACTAACTACCAAAACAACGTGAACAATCCAACGAGTCGATTCACGGCGTATTCCGA 831
Query 662 CGGAGGAAACGGTCGATCTCAATCATTCAAAACCTACACACACGACGCTAACGCCGGTAA 721
|||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 832 CGGAGGTAACGGTCGATCTCAAACATTCAAAACCTACACACACGAAGCTAACGCCGGTAA 891
Query 722 CGGTCAATCGTTCTCCAGCTACGGCAAAAACGGAAACGGAGCTCCGAACGAATTCGCTTC 781
||||||||| ||| | ||||||||||||||||||||||||| ||| ||||| ||| ||||
Sbjct 892 CGGTCAATCATTCACAAGCTACGGCAAAAACGGAAACGGAGTTCCTAACGAGTTCACTTC 951
Query 782 TTACGGCGCCTCCTCCAACGTTATCGGCTCCGGTTTCTCAAATTACGGCGAGAGTGGAAA 841
|||||||| ||||||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 952 TTACGGCGTCTCCTCCAATGTAATCGGCTCCGGTTTCTCTAACTACGGCGAGAGTGGAAA 1011
Query 842 CGCCGCCAACGATACCTTCACAAGCTACGGAACCGACAGTAATGTACCGCAGAACAATTT 901
||| || ||||||||||||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 1012 CGCGGCGAACGATACCTTCACAAGCTACGGAAGCGACGGTAATGTACCTCAGAACAATTT 1071
Query 902 CAAAAACTACGGCGCCTCTGGTAACGCCGCCGTGGACACCTTCGCGAATTACAGAGACAA 961
|| |||||||| || || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1072 TAATAACTACGGTGCTTCCGGTAACGCCGCCGTGGATACCTTCGCGAATTACAGAGACAA 1131
Query 962 AGCCAACGTCGGAGACGATTCGTTCTCTTCCTATGCCAAAGATTCGAATTCGGAGAAGGT 1021
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1132 GGCCAACGTCGGAGACGATTCGTTCTCATCCTATGCGAAAGATTCGAATTCGGAGAAGGT 1191
Query 1022 CAATTTCGTAAATTACGGTCAATCTTTCAATCCCGGTTCAGAAACTTTCACCGGTTATGG 1081
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TAATTTCGTAAATTACGGTCAATCTTTCAATCCCGGTTCAGAAACTTTCACCGGTTATGG 1251
Query 1082 CAAAGGAGCTGAAGGAAACAAAATCAGTTTCAAAACCTATACACCGAACTCAACTTTCAA 1141
||||||||||||||||| |||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct 1252 CAAAGGAGCTGAAGGAAGCAAACTCAGCTTCAAAACCTATACACCAAACTCTACTTTCAA 1311
Query 1142 AGACTACACCAAAAACGGCGTCGCTTTTGCTAAATACAACGCTTCAACCACCACCGCGAA 1201
|||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1312 GGACTACGCCAAAAAGGGCGTCGCTTTTGCTAAATACAACGTTTCAACAACCACCGCGAA 1371
Query 1202 CACCGTCGGCGATGGCAAAACCGTAAATAAATGGATCGAACCGGGTAAATTCTTTAGAGA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CACCGTCGGCGATGGCAAAACCGTAAATAAATGGATCGAACCGGGTAAATTCTTTAGAGA 1431
Query 1262 ATCGTCGCTTAAAGAAGGTACAGTGATTCCTATGCCTGATATTAAAGATAAAATGCCTAA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 ATCGTCGCTTAAAGAAGGTACAGTGATTCCTATGCCTGATATTAAAGATAAAATGCCTAA 1491
Query 1322 AAGGTCGTTTTTACCCCGGAGTATAATTACGAAACTACCCTTCTCCACTTCAAAACTCGG 1381
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1492 AAGGTCGTTTTTACCCCGGAGTATAATTACGAAACTACCCTTCTCTACTTCTAAACTCGG 1551
Query 1382 AGAGATTAAGAGAATCTTCCACGCCGGTGAGAACTCGACGAT-GGATGGTATAATCACCG 1440
||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||||
Sbjct 1552 TGAGATTAAGAGAATCTTCCACGCCGTTGAGAATTCGACGATGGGA-GGTATAATCACCG 1610
Query 1441 ACGCCGTGACGGAGTGCGAGAGACCACCGAGCGTCGGAGAGACAAAACGGTGCGTCGGAT 1500
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 1611 ACGCAGTGACGGAGTGCGAGAGGCCACCGAGCGTCGGAGAGACGAAACGGTGCGTAGGAT 1670
Query 1501 CGGCGGAGGACATGATCGATTTCGCGACGTCGGTGTTAGGTCGTAGCGTGGTGCTTCGAA 1560
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1671 CAGCGGAGGATATGATCGATTTCGCGACGTCGGTGTTAGGTCGTAGCGTGGTGCTTAGAA 1730
Query 1561 CAACGGAGAATGTAGCCGGGTCAAAGCAAAAGGTAGTGATCGGGAAAGTCAACGGAATCA 1620
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1731 CAACGGAGAACGTAGCCGGGTCAAAGGAAAAGGTAGTGATCGGGAAAGTCAACGGAATCA 1790
Query 1621 ACGGTGGGAAATTAACGAAAGCTGTGTCGTGTCATCAGAGTTTGTACCCGTATCTATTGT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 ACGGTGGGAAATTAACGAAAGCTGTGTCGTGTCATCAGAGTTTGTACCCGTATCTATTGT 1850
Query 1681 ATTACTGTCACTCCGTACCTAAGGTTCGGGTATACGAAGCTGATCTTCTAGAGTTGAATA 1740
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATTACTGCCACTCCGTACCAAAGGTTCGGGTATACGAAGCTGATCTTCTAGAGTTGAATA 1910
Query 1741 GTAAGAAGAAGATTAACCACGGGATTGCCATCTGTCACATGGACACGTCATCATGGGGTC 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 GTAAGAAGAAGATTAACCACGGGATTGCCATCTGTCACATGGACACGTCATCATGGGGTC 1970
Query 1801 CGAGTCATGGAGCTTTCTTAGCTCTCGGGTCAAAACCGGGTCGGATCGAAGTTTGTCACT 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 CGAGTCATGGAGCTTTCTTAGCTCTCGGGTCAAAACCGGGTCGGATCGAAGTTTGTCACT 2030
Query 1861 GGATATTTGAGAACGACATGAACTGGGCTATTGCTGATTAGACC 1904
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2031 GGATATTTGAGAACGACATGAACTGGGCTATCGCTGATTAGACC 2074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95130032775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5