BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926358
Length=352
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26830.1 | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 ... 377 3e-104
> AT1G26830.1 | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin
3 | chr1:9295736-9298541 FORWARD LENGTH=2572
Length=2572
Score = 377 bits (204), Expect = 3e-104
Identities = 215/220 (98%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 10 GGTTTCAAAATATGAGTAATCAGAAGAAGAGGAATTTTCAGATAGAGGCGTTTAAGCATC 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GGTTTCAAAATATGAGTAATCAGAAGAAGAGGAATTTTCAGATAGAGGCGTTTAAGCATC 255
Query 70 GCGTCGTTGTAGATCCCAAATACGCTGATAAAACTTGGCAGATTCTTGAGCGTGCGATCC 129
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GAGTCGTTGTGGATCCCAAATACGCTGATAAAACTTGGCAGATTCTTGAGCGTGCGATCC 315
Query 130 ATCAGATTTATAATCAAGATGCTAGCGGTCTCAGTTTCGAAGAACTTTACAGAAATGCGT 189
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 ATCAGATTTACAATCAAGATGCTAGCGGTCTCAGTTTCGAAGAACTTTACAGAAATGCGT 375
Query 190 ACAACATGGTCCTGCACAAGTTTGGTGAGAAAGTtatata 229
||||||||||||||||||||||||||||||| | ||||||
Sbjct 376 ACAACATGGTCCTGCACAAGTTTGGTGAGAA-GCTATATA 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16487821672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5