BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926360
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70960.1 | Symbols: | F-box and associated interaction doma... 754 0.0
AT1G71290.1 | Symbols: | F-box associated ubiquitination effec... 250 2e-65
> AT1G70960.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:26756253-26757362 FORWARD LENGTH=1110
Length=1110
Score = 754 bits (408), Expect = 0.0
Identities = 933/1173 (80%), Gaps = 90/1173 (8%)
Strand=Plus/Plus
Query 21 ATGGTGAACACAAGTTTCGAAACACCTCCT-GA-A-ATGCATGTGGAGATTCTGGCACGG 77
||||||||||||||||||||||||| |||| || | ||||| ||||||||||| |||||
Sbjct 1 ATGGTGAACACAAGTTTCGAAACACTTCCTAGACATATGCAAATGGAGATTCTGTCACGG 60
Query 78 TTGCCTCTGAAATCCTTAATGAAATTCATGTCCGTCTCAAAGAAATGGGAATCTATCATA 137
|||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 61 GTGCCTCTGAAATTTTTAATGAAATTCATGTGCGTCTCAAAGAAATGGGCATCTATCATT 120
Query 138 CGTGGGGAACAATTCAGACG-TGATTACTTGATCCAATCAATGACAAGGCCTCGAGTGTT 196
||||||||| |||||||| | ||||||||| |||||||||||| |||||||||||||||
Sbjct 121 CGTGGGGAAGAATTCAGA-GAAGATTACTTGTTCCAATCAATGAAAAGGCCTCGAGTGTT 179
Query 197 GTTCGTCGCCAATCGTAGATACTTCCACAATTTCAAACCCGAAGCGCTCTTTCATTCTGT 256
||||||| | ||| |||| | | || | | |||||||||||||| ||||||| |||||
Sbjct 180 GTTCGTCATCGATCATAGAGAATACCTCCCTATCAAACCCGAAGCGTTCTTTCACTCTGT 239
Query 257 TTATCAAG-AG--GAACCATCGTCGTTATCTAGTGTACAGCAG-ATGCGTACATACGAAA 312
|||||||| || |||||| || ||| ||| || ||||| | |||||||||| |||||
Sbjct 240 TTATCAAGAAGATCAACCATTGTTGTTGTCTGGTAAACAGC-GTATGCGTACATTCGAAA 298
Query 313 CACCACTT-TAT-AAGGTTTCTCAACCCGTCCGTGGTTTGATATGTCATCAAGGAGATAC 370
|||||||| | | || |||| ||||||| ||||||||||||| ||||| |||||| ||
Sbjct 299 CACCACTTGT-TCAA-GTTTTTCAACCCATCCGTGGTTTGATCTGTCAACAAGGATATGG 356
Query 371 TAATATTGTGATTTGCAATCCGGGTTTGAAAAAGTTTCGGAACTTACCGCAGATCGAAGT 430
||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 357 TAAGATTGTGATTTGCAATCCGGGTTTAAAAAAGTTTCGGAGTTTACCGCAGATCAAAGT 416
Query 431 GCCTGAATTTGCATCCATGAGAAGTTTTTTCGGATATGATGAAGTTAAGAATGTATTCAA 490
| | || ||| ||||||||| |||||| ||||| ||||||| |||| ||||||||||
Sbjct 417 TCATAAAGGAGCACCCATGAGAACTTTTTTTGGATACGATGAAGATAAGGATGTATTCAA 476
Query 491 GGTGTTATGTATAACACAGTTAGTAAAATATCAGACAACTACTGAAGGTGATATACACAA 550
|||||||||||| | ||| | | || || || | | || | | || || ||
Sbjct 477 GGTGTTATGTAT-A-ACA--T-G-----GCTCCGA-AA-TGGT-AA-GCG--AT-CAGAA 519
Query 551 GGTGAGATCGGATGTAGG-ACATCAGGTATACACGGTGAGATCGGATGTGGAATCTTCTT 609
|| | | | | ||| | ||| ||||||||| || ||||||||| ||||||||||
Sbjct 520 -GT-A-A---G-T-AAGGAATATCTTGTATACACGATGGGATCGGATGAAGAATCTTCTT 571
Query 610 CTTGGAAAGG--GATCGCATGTAATTATGATTATTCAGCAGTTACTGAAGGACTATTTAA 667
||||| ||| |||| ||||| | |||| || || ||||||| |||||||| |||||
Sbjct 572 CTTGG--AGGCTGATCACATGTGAGCATGACCATGCACCAGTTACCGAAGGACTTTTTAA 629
Query 668 AGGAGGTTTCTTGTACTATGGAGCTCAGTCCAATAATGACCAATCTGTGGTAATGAGTTT 727
|||||| | ||||||||||||||| | |||||||||| | |||| ||||||||||| ||
Sbjct 630 AGGAGGAGTGTTGTACTATGGAGCTAAATCCAATAATGGCAAATCAGTGGTAATGAGCTT 689
Query 728 CAACGTGAGTTCTGAAGATTTTAGTGTCATTGAGTTGCCTAACGAAGTCGACTTT-GATA 786
|||||||| |||||||||||||||||||||||||||| |||||||| || | |
Sbjct 690 CAACGTGAATTCTGAAGATTTTAGTGTCATTGAGTTG------GAAGTCGAAATTAG-TC 742
Query 787 ATAATTGGAAATTGGTGAATTACAAAGGGGG-TATTGCCTTGGTGGATGAGGACAACTTT 845
| |||||| ||||||||||||||| ||||| ||||||| | |||| ||||| ||
Sbjct 743 CTTATTGGAGATTGGTGAATTACAA-GGGGGATATTGCCCTA----ATGA--ACAACATT 795
Query 846 GAC-ATTCACTTGAATGGCAATAGAGTTTTTAAAATTTTGTTTAGGAACGAAGTTGCTGG 904
|| || |||| || || | ||| ||| |||| | | |||||||||| ||| ||||
Sbjct 796 GAGGATAG-CTTGTATCACAGTCGAGAATTTGAAATGTGGGTTAGGAACGAGGTTACTGG 854
Query 905 AAATTGGGAGATAGAG-ACCATTGAGATTCCTCGTTGGAAAGAAACGGTTGAT---AACG 960
||||||||| | | | | |||| ||||| ||| |||||| | ||| |||||| || |
Sbjct 855 AAATTGGGACAGA-ACTAGCATTAAGATTTCTCATTGGAATGGAACTGTTGATGGTAA-G 912
Query 961 AGGATTATCATTTTAAAGGTACCATTGGAACAGGAGAACTTCTTGTTTTCGTACCA-ACT 1019
| | || | |||| |||||||| ||||||||| ||||||| | ||||| |||| |||
Sbjct 913 ACGTTT-T-ATTTCAAAGGTACTATTGGAACAAAAGAACTT---GCTTTCGCACCAGACT 967
Query 1020 CAT-GGTACTCGGTTCGGGAGAAGAGT--GT-T-GTATTGCGATGA-AGCCACAAAGAAC 1073
|| ||| | || || | || | | || | ||||| |||| | || |||||||||
Sbjct 968 -ATTGGTT-T-GG---GGAACAACATTTTGTGTCGTATTACGAT-ACAGAAACAAAGAAC 1020
Query 1074 CTCAGAAGATTTGATATTGAAGAAAGAATGATTGATGAAGATCATATTGTTCGAACCTTC 1133
|||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct 1021 CTCAGAAGATTTGATATTGAAG---GAATGGTTGATCAAGATGATTTTGTTCGAACCTTC 1077
Query 1134 TTTGATCATGTTGATAGTACTTGGCTTATGTGA 1166
||||||||||||||||||||||||||||| |||
Sbjct 1078 TTTGATCATGTTGATAGTACTTGGCTTATATGA 1110
> AT1G71290.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:26872643-26873242 FORWARD LENGTH=600
Length=600
Score = 250 bits (135), Expect = 2e-65
Identities = 470/622 (76%), Gaps = 62/622 (10%)
Strand=Plus/Plus
Query 582 ACGGTGAGATC-GGATGTGGAATCTTCTTCTTGGAAAGGGATCGCATGTAATTATGATTA 640
|||||| |||| || || |||||| |||||||| || |||| ||||||| ||||| |
Sbjct 4 ACGGTGGGATCAGG-TGAAGAATCTAATTCTTGGAGAGTGATCACATGTAAGCATGATCA 62
Query 641 TTCAGCAGTTACTGAAGGACTATTTAAAGGAGGTTTCTTGTACTATGGAGC---TCAGTC 697
|||| |||||||||||||||||| |||||||||||||||||| |||||||| | ||||
Sbjct 63 TTCACCAGTTACTGAAGGACTATGTAAAGGAGGTTTCTTGTATTATGGAGCTGATGAGTC 122
Query 698 CAATAATGACCAATCTGTGGTAATGAGTTTCAACGTGAGTTCTGAAGATTTTAGTGTCAT 757
||||| |||| ||||||||||| |||| |||||||||||||||||||| ||||| |||||
Sbjct 123 CAATAGTGACAAATCTGTGGTAGTGAGCTTCAACGTGAGTTCTGAAGAGTTTAGCGTCAT 182
Query 758 TGAGTTGCCTAACGAAGTCGACTTTGATAATAATTGGAAATTGGTGAATTACAAAGGGGG 817
||| |||||| | |||||| | ||||| || ||||| ||||||||| ||| || ||||
Sbjct 183 TGAATTGCCTGAGGAAGTCAAGATTGATCATCGTTGGAGATTGGTGAACTAC-AATGGGG 241
Query 818 TA-TTGCCTTGGT-G--GA---TGAGGACAACTTTGACA-T-T-----CACTTGAATGGC 863
| ||||||| || | || |||| |||||| | | | || |||||||
Sbjct 242 AAGTTGCCTTAGTAGATGACTCTGAGTTTGACTTTGGTATTGTGAAAGAAC-CGAATGGC 300
Query 864 AATAGAGTTTTTAAAATT-TTGTTTAGGAACGAAGTTGCTGGAAATTGGGAGATAGAGAC 922
||| |||| ||| |||| | | | ||||||||| || ||||| || || | ||| ||
Sbjct 301 AATGGAGTATTT-GAATTGTGGGTAAGGAACGAAACTGATGGAACTT-GGTG-GAGAAAC 357
Query 923 --CATTGAGATTCCTCGTTGGAAAGAAAC-GGTT-G--ATAACGAGGATTATCATTTTAA 976
|||||||||||||| |||| || ||| ||| | ||| || | || || || ||
Sbjct 358 TGCATTGAGATTCCTCATTGGGAA-CAACATGTTGGAAATATGGA-GTTTTTC--TTCAA 413
Query 977 AGGTACCATTGGAACAGGAGAACTTCTTGTTTTCG-TACCA-ACTCATGGT-ACT-CG-G 1031
||||||||||||||| |||||| ||||| |||| | | | |||| | || | | | |
Sbjct 414 AGGTACCATTGGAACTGGAGAA---CTTGTGTTCGCT-CAAGACTC-T-GTGATTGAGAG 467
Query 1032 TTCGGGAGAAGAGTGTTGTATTGCGATGA-AGCCACA-AAGAACCTCAGAAGATTTGA-T 1088
|| | | | ||| |||| ||| | || |||| || || |||||||||||| |
Sbjct 468 ATCATTCTATGTG-GTT-TATTATGAT-ACAGTCACACAA-AATCTCAGAAGATTT-ACG 522
Query 1089 ATTGAAGAAAGAATGATTGATGA--AG-ATCAT-ATTGTTCGAACCTTCTTTGATCATGT 1144
||||||| | | | | || || || |||| | ||||||||||||||| ||||||||
Sbjct 523 ATTGAAG-GTGTA-GCTAGA-GATCAGCTTCATGA-TGTTCGAACCTTCTTGGATCATGT 578
Query 1145 TGATAGTACTTGGCTTATGTGA 1166
||||||||||||||||||||||
Sbjct 579 TGATAGTACTTGGCTTATGTGA 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5