BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926369
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70460.1 | Symbols: RHS10 | root hair specific 10 | chr1:265... 1469 0.0
AT1G70450.1 | Symbols: | Protein kinase superfamily protein | ... 1461 0.0
> AT1G70460.1 | Symbols: RHS10 | root hair specific 10 | chr1:26555846-26559284
FORWARD LENGTH=2732
Length=2732
Score = 1469 bits (795), Expect = 0.0
Identities = 892/940 (95%), Gaps = 2/940 (0%)
Strand=Plus/Plus
Query 120 ACACATTTCACCTATGAAGAGCTAACGGACATAACAGAAGGATTTTCTAAGCAAAACATA 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1324 ACACATTTCACATATGAAGAGCTAACGGACATAACAGAAGGATTTTCTAAGCATAACATA 1383
Query 180 CTTGGAGAAGGAGGGTTTGGTTATGTCTACAAAGGTAAACTAAATGACGGAAAACTTGTT 239
|||||||||||||| ||||||| ||| || ||||||||| ||||||| ||||||||||||
Sbjct 1384 CTTGGAGAAGGAGGTTTTGGTTGTGTGTATAAAGGTAAATTAAATGATGGAAAACTTGTT 1443
Query 240 GCTGTTAAGCAGCTTAAGGTTGGTAGCAGACAAGGTGACCGTGAGTTTAAGGCGGAGGTT 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1444 GCTGTTAAGCAGCTTAAGGTTGGTAGCGGACAAGGTGACCGTGAGTTTAAGGCGGAGGTT 1503
Query 300 GAGATTATTAGTCGTGTTCACCATCGCCATTTGGTTTCTCTTGTTGGATACTGCATTTCG 359
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1504 GAGATTATTAGCCGTGTTCATCATCGCCATTTGGTTTCTCTTGTTGGATACTGCATTGCG 1563
Query 360 GATTCAGAGAGATTGCTTATCTATGAGTATGTTCCTAACCAAACCTTGGAGCATCATTTG 419
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 1564 GATTCAGAGAGATTGCTTATCTATGAATATGTTCCTAACCAAACATTGGAACATCATTTG 1623
Query 420 CATGGGAAGGGAAGGCCAGTCCTTGAATGGGCTAGGAGAGTCAGAATCGCTATAGGTTCT 479
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1624 CATGGGAAGGGAAGGCCAGTACTTGAATGGGCTAGGAGAGTCAGAATTGCTATAGGTTCT 1683
Query 480 GCCAAAGGTTTGGCGTATTTGCATGAAGACTGTCATCCAAAAATCATTCACAGGGACATA 539
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 1684 GCCAAAGGTTTGGCGTATTTACACGAAGACTGTCACCCAAAAATCATTCACAGGGACATA 1743
Query 540 AAGTCCGCAAACATCTTGCTGGACGATGAGTTTGAAGTTCAGGTTGCTGACTTTGGACTT 599
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1744 AAGTCCGCTAACATCTTGCTGGACGATGAGTTTGAAGCTCAGGTTGCTGACTTTGGACTT 1803
Query 600 GCCAAACTCAATGATACAACACAAACTCATGTATCAACTCGCGTTATGGGAACCTTGGGG 659
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1804 GCCAAACTCAATGATTCAACACAAACTCATGTATCAACTCGCGTTATGGGAACCTTCGGG 1863
Query 660 TACTTGGCACCAGAATATGCACAAAGTGGAAACCTGACTGATAGATCAGATGTTTTCTCG 719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1864 TACTTGGCACCAGAATATGCACAAAGTGGAAAGCTGACTGATAGATCAGATGTTTTCTCG 1923
Query 720 TTTGGGGTTGTTCTCTTAGAGCTTATAACCGGACGCAAACCAGTTGACCAGTACCAGCCT 779
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1924 TTTGGGGTTGTTCTCTTAGAGCTTATAACAGGACGCAAACCTGTTGACCAATACCAGCCT 1983
Query 780 ATGGGAGAAGAGAGTTTGGTTGAATGGGCTCGTCCACTGCTTGACAAAGCCATTGAGACC 839
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1984 TTGGGAGAAGAGAGTTTGGTTGAATGGGCTCGTCCTCTGCTTCACAAAGCCATTGAGACC 2043
Query 840 GGCGATTTCAGCGAACTAGTTGATAGACGGCTGGAAAAGAATTACGTGGAGAAAGAAGTT 899
|| |||||||| |||||||||||||||||||| |||||| |||| |||||||| ||||||
Sbjct 2044 GGTGATTTCAGTGAACTAGTTGATAGACGGCTCGAAAAGCATTATGTGGAGAATGAAGTT 2103
Query 900 TTCAGAATGATTGAAACGGCCGCTGCTTGTGTTAGGCATTCTGGTCCAAAACGTCCACGC 959
||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 2104 TTCAGAATGATTGAAACAGCTGCTGCTTGTGTTAGGCATTCAGGTCCAAAACGTCCACGT 2163
Query 960 ATGGTTCAGGTTTTGAGAGCACTGGATAGTGAAGGGGACATGGGAGATATCAGCAATGG- 1018
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2164 ATGGTTCAGGTTGTGAGAGCATTGGATAGTGAAGGGGACATGGGAGATATCAGCAATGGT 2223
Query 1019 AAGAAAAGTGGGACAAAGCAGTGGTTATGAATCTGGTCAG 1058
|| ||| |||||||||||||||| |||||| |||||||||
Sbjct 2224 AACAAA-GTGGGACAAAGCAGTGCTTATGACTCTGGTCAG 2262
> AT1G70450.1 | Symbols: | Protein kinase superfamily protein
| chr1:26552576-26554437 FORWARD LENGTH=1185
Length=1185
Score = 1461 bits (791), Expect = 0.0
Identities = 996/1091 (91%), Gaps = 30/1091 (3%)
Strand=Plus/Plus
Query 118 AGACACATTTCACCTATGAAGAGCTA-ACGGACATAACAGAAGGATTTTCTAAGCAAAAC 176
|||| ||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 101 AGACTCATTTTACCTATGAAGAGCTAGA-GGACATAACAGAAGGGTTTTCTAAGCAAAAC 159
Query 177 ATACTTGGAGAAGGAGGGTTTGGTTATGTCTACAAAGGTAAACTAAATGACGGAAAACTT 236
||||||||||||||||| ||||||| ||||||||||||||||||||| || |||||||||
Sbjct 160 ATACTTGGAGAAGGAGGTTTTGGTTGTGTCTACAAAGGTAAACTAAAAGATGGAAAACTT 219
Query 237 GTTGCTGTTAAGCAGCTTAAGGTTGGTAGCAGACAAGGTGACCGTGAGTTTAAGGCGGAG 296
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 220 GTTGCTGTTAAGCAGCTTAAGGTTGGTAGCGGACAAGGAGACCGTGAGTTTAAGGCGGAG 279
Query 297 GTTGAGATTATTAGTCGTGTTCACCATCGCCATTTGGTTTCTCTTGTTGGATACTGCATT 356
|||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 280 GTTGAGATTATTAGCCGTGTTCATCATCGCCATTTGGTATCGCTTGTTGGATACTGCATT 339
Query 357 TCGGATTCAGAGAGATTGCTTATCTATGAGTATGTTCCTAACCAAACCTTGGAGCATCAT 416
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 340 GCGGATTCAGAGAGATTGCTTATCTATGAGTATGTTCCTAACCAAACATTGGAGCATCAT 399
Query 417 TTGCATGGGAAGGGAAGGCCAGTCCTTGAATGGGCTAGGAGAGTCAGAATCGCTATAGGT 476
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 400 TTGCATGGGAAGGGTAGGCCAGTGCTTGAATGGGCTAGGAGAGTCAGAATCGCTATA-GT 458
Query 477 TCTGCCAAAGGTTTGGCGTATTTGCATGAAGAC--T--GTCATCCAAAAATCATTCACAG 532
|||||||||||||||||||||||||| |||||| | |||| |||||||||||||||||
Sbjct 459 TCTGCCAAAGGTTTGGCGTATTTGCACGAAGACTGTAAGTCACCCAAAAATCATTCACAG 518
Query 533 GGACATAAAGTCCGCAAACATCTTGCTGGACGATGAGTTTGAAGTTCAGGTTGCTGACTT 592
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGACATAAAGTCCGCTAACATCTTGCTGGACGATGAGTTTGAAGTTCAGGTTGCTGACTT 578
Query 593 TGGACTTGCCAAACTCAATGATACAACACAAACTCATGTATCAACTCGCGTTATGGGAAC 652
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 579 TGGACTTGCCAAAGTCAATGATACAACACAAACTCATGTCTCAACTCGCGTTATGGGAAC 638
Query 653 CTTGGGGTACTTGGCACCAGAATATGCACAAAGTGGA-AACCTGACTGATAGATCAGATG 711
||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 639 CTTCGGGTACTTGGCACCAGAATATGCACAAAGTGGACAACTT-ACTGATAGATCAGATG 697
Query 712 TTTTCTCGTTTGGGGTTGTTCTCTTAGAGCTTATAACCGGACGCAAACCAGTTGACCAGT 771
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 698 TTTTCTCGTTTGGAGTTGTTCTCTTAGAGCTTATAACTGGACGCAAACCTGTTGACCGGA 757
Query 772 ACCAGCCTATGGGAGAAGAGAGTTTGGTTGAATGGGCTCGTCCACTGCTTGACAAAGCCA 831
|||||||| ||||||||||||||||||||| ||||||||||||||| ||| | |||||||
Sbjct 758 ACCAGCCTTTGGGAGAAGAGAGTTTGGTTGGATGGGCTCGTCCACTACTTAAAAAAGCCA 817
Query 832 TTGAGACCGGCGATTTCAGCGAACTAGTTGATAGACGGCTGGAAAAGAATTACGTGGAGA 891
|||||||||| |||||||| |||||||||||||||||||| |||||| |||||||| |||
Sbjct 818 TTGAGACCGGTGATTTCAGTGAACTAGTTGATAGACGGCTCGAAAAGCATTACGTGAAGA 877
Query 892 AAGAAGTTTTCAGAATGATTGAAACGGCCGCTGCTTGTGTTAGGCATTCTGGTCCAAAAC 951
| |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||
Sbjct 878 ATGAAGTTTTCAGAATGATTGAAACGGCTGCTGCTTGTGTTAGGTATTCAGGTCCAAAAC 937
Query 952 GTCCACGCATGGTTCAGGTTTTGAGAGCACTGGATAGTGAAGGGGACATGGGAGATATCA 1011
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 938 GTCCACGCATGGTTCAGGTTTTGAGAGCACTAGATAGTGAAGGAGACATGGGAGATATCT 997
Query 1012 GCAATGGAAGAAAAGTGGGACAAAGCAGTGGTTATGA--A-TCTGGTCAGACTAA-AGTT 1067
||||||||| |||||||||||||||||| || ||| | |||||||||| | | |||
Sbjct 998 GCAATGGAATCAAAGTGGGACAAAGCAGTACTTGTGACGACTCTGGTCAGAATCATAGT- 1056
Query 1068 GTGATAAAGGACATCGGGTCTACTTTAGTAA-A--AGGA--G-TGGTATCAGGGACT-AT 1120
|||||||||||| ||||||||| | || || | |||| | ||||||||||| | |
Sbjct 1057 GTGATAAAGGACGTCGGGTCTA-T--AGGAAGAGGAGGAATGGTGGTATCAGGGG-TGAG 1112
Query 1121 GTTGCTCACACGTGTGATG-TATGATTCTTATCAGAATCGACACGAGAGAAGGAAA-CAC 1178
| || |||||||| ||||| | |||| ||||||| ||||| |||||| ||| |||| ||
Sbjct 1113 GGTGGTCACACGTTTGATGGT-TGATGCTTATCATAATCGGCACGAGGGAAAGAAAGCA- 1170
Query 1179 GAGAGTAAGAA 1189
||||| |||||
Sbjct 1171 GAGAG-AAGAA 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5