BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926372
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70480.2 | Symbols: | Domain of unknown function (DUF220) |... 1498 0.0
> AT1G70480.2 | Symbols: | Domain of unknown function (DUF220)
| chr1:26562059-26563809 FORWARD LENGTH=1409
Length=1409
Score = 1498 bits (811), Expect = 0.0
Identities = 933/992 (94%), Gaps = 7/992 (1%)
Strand=Plus/Plus
Query 3 ACATTGTGCAGAG-AATAAATGGGCAATCCTGGTTCAGACACGGAGAGAAACAAGAGAAA 61
||| ||||||| | | ||||||||||||| || |||||||| |||||||||||| ||||
Sbjct 228 ACACTGTGCAG-GTCAGAAATGGGCAATCCGGGATCAGACACAGAGAGAAACAAGGGAAA 286
Query 62 TGTGGTCTCAAGTGTGTTTGATCCTGCACTCTCTCGATTCGTTGGATTTTCTCAGAAACT 121
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 287 TGTGGTCTCAAGTGTGTTTGATCCTGCACTCTCTCGATTCGTTGGATTTTCCCAGAAACT 346
Query 122 CCAAACTTGTCTTAAGTCCCAGCTTAAGAATTTGAAAGTTGATAAGCATGGGATTGGTTC 181
||||||| |||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 347 CCAAACTCGTCTTAAGTCCCAGCTGAAGAATTTGACAGATGATAAGCATGGGATTGGTTC 406
Query 182 TTCATGGAGGCAAGATAAAG-AAGGGTCGTCGAGCTCCATGGAAATTGATCTGGAGAAAC 240
|||||||||||||||||||| || || |||| ||||||| ||||||||||||||||||
Sbjct 407 TTCATGGAGGCAAGATAAAGGAAAC-TCATCGATCTCCATGCAAATTGATCTGGAGAAAC 465
Query 241 AGTTAGATATGT-GGAGAGAAAACCCTTCTTGGACTGATCAGATCCCAGTCGTTAAGGTG 299
|||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 466 AGTTAGAT-TGTTGGAGGGAAAACCCTTCGTGGACTGATCAGATCCCAGTCGTTAAGGTG 524
Query 300 AGTATTCCAAAAGGATCGCTTTGCAATCTCAAAGCCGAGGTGAATGTTGGTTTACCTCCT 359
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 525 GGTATTCCAAAAGGATCGCTTTGCAATCTTAAAGCCGAGGTGAATGTTGGTTTACCTCCT 584
Query 360 GATGCAGTCTATAACATTGTGATTGACCCTGACAACAGAAGAGTCTTCAAAAATATTAAG 419
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||
Sbjct 585 GATGCAGTCTATAACATTGTAATTGACCCTGACAATAGAAGAGTCTTCAAGAATATCAAG 644
Query 420 GAGGTTATGTCGCGGAAAGTATTGGTAGATGAAGGGTTAAGGCAAGTTGTGGAAGTAGAA 479
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 645 GAGGTTATGTCGCGGAAAGTATTGGTAGATGACGGGTTAAGGCAAGTGGTGGAAGTTGAA 704
Query 480 CAAGCAGCTCTGTGGAGATTTCTCTGGTGGTCAGGAACAATCTCAGTTCATGTCTTGGTG 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CAAGCAGCTTTGTGGAGATTTCTCTGGTGGTCAGGAACAATCTCAGTTCATGTCTTGGTG 764
Query 540 GATCAGAACCGTGCAGATCACTCTATGAAATTCAAGCAAGTGAAGAGTGGATTCATGAAG 599
|||||| | || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 765 GATCAGGATCGGGCAGATCACTCTATGAAATTCAAGCAAGTGAAAAGTGGATTCATGAAG 824
Query 600 AGATTTGAAGGAAGCTGGCAAGTTAAGCCTTTGTTTGTGGACGAACATATGTGTGATCGT 659
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 825 AGATTCGAAGGAAGCTGGCAAGTAAAGCCTTTGTTTGTGGATGAACATATGTGCGATCGT 884
Query 660 TTGAAACCGAAAACGCTGGAGGAGTATAACCGGTGCACTCGAGGTAAAGGGAGGATCGGA 719
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 885 TTGAAACCGAAAACGCTGGAGGAGTATAACAGGTGCACTGGAGGTAAAGGGAGGATCGGA 944
Query 720 TCTAAGGTTACGCTGGACCAGCTAATACAGCCAGCAATTGTTCCACCTCCGCCCATTTCT 779
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 945 TCTAAGGTAACGCTGGACCAGCTAATACAGCCAGCGATTGTTCCACCTCCGCCCATTTCT 1004
Query 780 TGGTATCTCAGAGGAATCACGGCTAAAACGACAGAGATGCTCATCCATGACTTGTTGGCT 839
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1005 TGGTATCTCAGAGGAATCACGGCTAAGACGACAGAGATGCTTATCCATGACTTGTTGGCT 1064
Query 840 GAGACCGCCAGGATCCGTACAGCCGGAGAAATGGAGGATGGTCACTCGCCGGATAAGCAA 899
|||||||||||||||||| |||| |||| ||||||||||||||||||||| ||| |||||
Sbjct 1065 GAGACCGCCAGGATCCGTGCAGCTGGAGTAATGGAGGATGGTCACTCGCCCGATGAGCAA 1124
Query 900 CGGATTGGGACACCTGGGGATATAAAGGAAAGATGGGCTGCACATAGAAGAACATCAAGG 959
|||||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1125 CGGATTGGCACACCTGGAGATATAAAAGAAAGATGGTCTGCACATAGAAGAACATCAAGG 1184
Query 960 AGACGACGCAATGATTTGTGTTAAAGTCACAG 991
|||||||||||||||||||||||| |||||||
Sbjct 1185 AGACGACGCAATGATTTGTGTTAA-GTCACAG 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49128995766
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5