BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926378
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70520.1 | Symbols: CRK2 | cysteine-rich RLK (RECEPTOR-like ... 3001 0.0
> AT1G70520.1 | Symbols: CRK2 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 2 | chr1:26584729-26587419 REVERSE LENGTH=2194
Length=2194
Score = 3001 bits (1625), Expect = 0.0
Identities = 1873/1994 (94%), Gaps = 11/1994 (1%)
Strand=Plus/Plus
Query 2 TCAATCAAAACCAAACAAAATGAAGAAAGAACCAATTCATATCCTTCCTCTGTACCTTCC 61
|||||| |||| ||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 68 TCAATC-AAACAAAACAAAATGAAGAAAGAACCTGTCCATATCCTTCCTCTGTACCTTCC 126
Query 62 ATGTCTCTTAATGTTTCTTCTTTCATCACTCCGTCAAATCACCGGAGACGCAAGGGCTCG 121
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 127 ATGTCTCTTGATGTTTCTTCTTTCATCACTCCGTCAAATCACCGGAGACGCAAGGGCTAG 186
Query 122 AGCTGTTCAAGTCACTTGCTCACCTTTGCTTGAGCACAACGAAACCGCTTATGTCCCAAA 181
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AGCCGTTAAAGTCACTTGCTCACCTTTGCTTGAGCACAACGAAACCGCTTATGTCCCAAA 246
Query 182 TTTCGTAGCCACAATGGAGAAAATCAGTACACAAGTACAAACTTCCGGTTTTGGAGTTGC 241
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 247 TTTCGTAGCCACAATGGAGAAAATCAGCACACAAGTACAAACTTCCGGTTTTGGAGTTGC 306
Query 242 TCTCACCGGTACAGGACCTGATGCTAACTACGGTCTTGCACAGTGCTACGGTGATCTTCC 301
|||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||
Sbjct 307 TCTCACCGGTACAGGACCAGACGCTAACTATGGTCTTGCGCAGTGCTATGGTGATCTTCC 366
Query 302 TTTAAACGATTGCGTCCTCTGTTACGCGGAAGCACGGACGATGCTTCCGCAGTGTTATCC 361
|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 367 TTTAAACGATTGTGTACTCTGTTACGCGGAAGCAAGGACGATGCTTCCGCAGTGTTATCC 426
Query 362 TCAGAACGGAGGAAGAATCTTTCTTGATGGATGTTTTATGAGAGCTGAGAATTATAGTTT 421
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TCAGAACGGAGGTAGAATCTTTCTTGATGGATGTTTTATGAGAGCTGAGAATTATAGTTT 486
Query 422 CTATAACGAATTCAAAGGACCTGAAGATAACGTTGTGTGTGGAAACACGACGCGAAAGAG 481
|||||| |||| ||||||||||||||||| | | || ||||||||||||||| ||||||
Sbjct 487 CTATAATGAATACAAAGGACCTGAAGATAGCATCGTATGTGGAAACACGACGAGAAAGAA 546
Query 482 TGAGACTTTCGGTGATGCGGTGAAG-CAAGGACTGAGAAATGCGGTTGCTGAGGCTTCTG 540
| ||||||| |||||||||||| || ||||| ||||||||||| ||| ||||||||||||
Sbjct 547 TAAGACTTTTGGTGATGCGGTG-AGACAAGGGCTGAGAAATGCTGTTACTGAGGCTTCTG 605
Query 541 GGAGTGGAGGGTACGCTCGTGCTTCTGCAAAGGCGGGTGAATCTGAATCTGAATCCGCGT 600
||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 606 GGACTGGAGGGTACGCTCGTGCGTCTGCAAAGGCGGGTGAATCTGAATCTGAATCAGCGT 665
Query 601 TTGTGTTGGCGAATTGCTGGAGAACTTTGAGTCCTGATTCTTGTAAACAGTGTTTGGAGA 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TTGTGTTGGCGAATTGTTGGAGAACTTTGAGTCCTGATTCTTGTAAACAGTGTTTGGAGA 725
Query 661 ACGCGTCTGCTTCTGTGGTTAAGGGGTGTTTGCCATGGTCAGAGGGACGTGCGCTTCACA 720
| || ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 726 ATGCCTCTGCTTCTGTGGTTAAAGGATGTTTGCCATGGTCAGAAGGACGTGCGCTTCACA 785
Query 721 CTGGATGTTTCCTTAGGTACTCTGATCAAGATTTCTTGAACAAGATATCAAGAAACGGAA 780
|||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 786 CTGGATGTTTCCTTCGGTACTCTGATCAAGATTTCTTGAATAAGATACCAAGAAACGGAA 845
Query 781 GATCAAGAGGCTCTGTGGTAGTGATTGTGGTCTCAGTTCTTAGCTCTGTGGTTGTCTTCA 840
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 846 GATCAAGAGGCTCTGTGGTAGTGATTGTGGTGTCAGTACTTAGCTCTGTGGTTGTCTTCA 905
Query 841 TGATTGGAATAGCAGTAAGTGTTTATATCTGCAAACGTCGGACCATCAAA-AGGAAGAGA 899
|||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 906 TGATTGGAGTAGCAGTAAGTGTTTATATCTGCAAACGTCGGACCAT-AAAGAGGAAGAGA 964
Query 900 AGAGGATCAAATGATGTTGAAAAAATGGCGAAAACTCTAAAAGACAGTAGCTTGAACTTC 959
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 965 AGAGGATCAAAAGATGTTGAGAAAATGGCGAAAACACTAAAAGACAGTAGCTTGAATTTC 1024
Query 960 AAATACTCAACACTGGAGAAAGCCACAGGTTCATTTGACGACGCAAACAAGCTTGGACAA 1019
|||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 1025 AAATACTCAACACTAGAGAAAGCCACAGGTTCTTTTGACAACGCGAACAAGCTTGGACAA 1084
Query 1020 GGCGGATTTGGAACTGTCTATAAGGGGGTTCTTCCAGACGGACGAGATATCGCTGTGAAG 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1085 GGCGGATTTGGAACTGTCTATAAGGGGGTTCTTCCAGACGGAAGAGATATCGCTGTGAAG 1144
Query 1080 CGGTTGTTCTTCAACAACAGACACAGGGCAACAGATTTCTACAATGAAGTCAACATGATT 1139
||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1145 CGGTTATTCTTTAACAACAGACATAGAGCAACCGATTTCTACAATGAAGTCAACATGATC 1204
Query 1140 AGCACTGTTGAACACAAGAACCTTGTTAGGCTACTTGGTTGCAGTTGCTCAGGACCAGAG 1199
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1205 AGCACTGTTGAACATAAGAACCTTGTTAGGCTGCTTGGTTGCAGCTGCTCAGGACCAGAG 1264
Query 1200 AGCCTCCTTGTCTATGAATACCTTCAGAACAAGAGCCTTGATCGATTCATCTTCGATGTG 1259
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1265 AGTCTCCTTGTCTATGAATACCTTCAGAACAAGAGCCTTGATCGATTCATCTTTGACGTG 1324
Query 1260 AACAGAGGGAAAACACTAGACTGGCAGAGAAGATACACGATCATCGTTGGGACCGCTGAA 1319
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1325 AACAGAGGGAAAACATTAGACTGGCAGAGAAGATACACGATCATCGTTGGAACCGCTGAA 1384
Query 1320 GGATTGGTGTATCTGCATGAGCAGTCGAGTGTGAAAATTATTCACAGAGACATAAAAGCA 1379
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1385 GGATTGGTGTATCTGCATGAGCAGTCGTCTGTGAAAATTATTCACAGAGACATAAAAGCA 1444
Query 1380 AGCAATATTCTTCTAGATTCAAAGCTTCAAGCTAAAATCGCCGACTTTGGACTGGCGAGA 1439
|| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1445 AGTAATATTCTGCTAGATTCAAAGCTTCAAGCTAAAATCGCCGATTTTGGTCTGGCGAGA 1504
Query 1440 TCGTTCCAGGACGATAAGAGCCATATCAGCACTGCCATTGCAGGGACCTTAGGTTATATG 1499
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1505 TCATTCCAGGACGATAAGAGCCATATTAGCACTGCCATTGCAGGGACCTTAGGTTATATG 1564
Query 1500 GCTCCAGAGTACTTAGCACATGGTCAGCTAACAGAGATGGTAGATGTCTACAGCTTTGGA 1559
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1565 GCTCCGGAGTACTTAGCACATGGTCAGCTAACAGAGATGGTAGACGTTTACAGCTTTGGA 1624
Query 1560 GTTCTTGTACTAGAGATTGTAACTGGAAAACAGAACACCAAAAGCAAAATGTCAGATTAC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 GTTCTTGTACTAGAGATTGTAACTGGAAAACAGAACACCAAAAGCAAAATGTCAGATTAC 1684
Query 1620 TCAGACAGTTTGATTACAGAAGCATGGAAGCATTTTCAGACAGGAGATTTAGAGGAAATA 1679
|||||||||||||| ||||| |||||||||||||||||| ||||||| || ||| |||||
Sbjct 1685 TCAGACAGTTTGATCACAGAGGCATGGAAGCATTTTCAGTCAGGAGAGTTGGAGAAAATA 1744
Query 1680 TATGATCCAAACCT-GAACTGGAAGAATCAGAATGATAGT-ATCATCATCAA-AAAGGAG 1736
|||||||||||||| || ||||||| |||| |||| ||| | ||||||||| |||| ||
Sbjct 1745 TATGATCCAAACCTCGAT-TGGAAGAGTCAGTATGACAGTCA-CATCATCAAGAAAG-AG 1801
Query 1737 ATAGCAAGAGTAGTTCAAATAGGGCTCTTGTGCACGCAAGAGATACCGTCGCTAAGACCA 1796
||||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 1802 ATAGCAAGAGTTGTTCAAATAGGGCTATTGTGCACTCAAGAGATCCCTTCGCTAAGACCA 1861
Query 1797 TCGATGTCAAAGTTGTTGCATATGCTAAAGAACAAAGAGGAAATCCTGCCATTGCCGAGT 1856
||||||| ||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct 1862 CCGATGTCTAAGTTATTACATATGCTAAAGAACAAAGAGGAGGTCTTGCCATTGCCGAGT 1921
Query 1857 AACCCTCCGTTTATGGATGAAAGAGTAATGGAACTTCGAGATGGTTCTTATGGCGATTCA 1916
|| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 1922 AATCCTCCGTTTATGGATGAAAGAGTCATGGAACTTCGAGATGGTTCTGATGGTGATTCA 1981
Query 1917 GCTGGTTGTGCATCGCTTGCCACTGTCTCACAAAGTTCCTTTTACGGTAGATGAGCCTTG 1976
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1982 GCTGGTTGTGCATCTCTTGCCACTGTCTCACAAAGTTCCTTTTATGGTAGATGAGCTTTG 2041
Query 1977 AAGAATTGTATAAG 1990
||||| ||||||||
Sbjct 2042 AAGAAGTGTATAAG 2055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98593870380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5