BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926380
Length=1992
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70530.1 | Symbols: CRK3 | cysteine-rich RLK (RECEPTOR-like ... 3007 0.0
> AT1G70530.1 | Symbols: CRK3 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 3 | chr1:26588750-26591379 REVERSE LENGTH=1941
Length=1941
Score = 3007 bits (1628), Expect = 0.0
Identities = 1848/1953 (95%), Gaps = 19/1953 (1%)
Strand=Plus/Plus
Query 23 ATGCCGATTCTAACTCTTCTTCTTCTTATTCTTCCTCTGGGtttttttATAAACCCTTCT 82
||||||||||| |||||||||||||||| | ||||||||| ||||||| |||||||
Sbjct 1 ATGCCGATTCTGACTCTTCTTCTTCTTA----T--TCTGGGTTTGTTTATAAGCCCTTCT 54
Query 83 GTTTCAGACTCGAGAGGAG-CGACGGTGGCTCAGATATGCAGCAACAGAACAAC-ACCGC 140
||||||||||||||||||| | || |||||||||||||||| |||||||||||| | |||
Sbjct 55 GTTTCAGACTCGAGAGGAGAC-ACAGTGGCTCAGATATGCAACAACAGAACAACGA-CGC 112
Query 141 CGCAACAGAGAAGTCTCTTCGTCA-AAACTTTCCTTGCCGCTATGGACGCCGTATCTCCA 199
|||||||||||||||||||||||| || |||||| ||||| |||||||| || ||||||
Sbjct 113 CGCAACAGAGAAGTCTCTTCGTCACCAA-TTTCCTCGCCGCCATGGACGCGGTCTCTCCA 171
Query 200 CTTGTGGAAGCTAAAGGTTATGGCCAAGTGGTCAACAACGCAAACGGAAATC-TAACCGT 258
|| ||||||||||||||||| || |||||||| ||||| | |||||| | |||||||
Sbjct 172 CTAGTGGAAGCTAAAGGTTACGGACAAGTGGT---CAACGGTACCGGAAA-CTTAACCGT 227
Query 259 CTACGCTTATGGAGAGTGTATAAAAGATCTTAATAAGAAAGACTGTGACTTGTGTTTCGC 318
||||||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 228 CTACGCTTACGGAGAGTGTATAAAAGATCTTGATAAGAAAGATTGCGACTTGTGTTTCGC 287
Query 319 TCAGATCAAAGCTAAAGTCCCTATTTGCTTACCTTTCCAAAGAGGTACTCGTGGTGGTCA 378
|||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 288 TCAGATCAAAGCTAAAGTTCCTCGTTGCTTACCTTTCCAAAAAGGTACTCGTGGTGGTCA 347
Query 379 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGATTACAATTTCTTTAACGAGACCTT 438
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 348 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGACTACAATTTCTATAACGAGACGTT 407
Query 439 AGGCTTGCAAGATCGGACAGTTTGTGCTCCAAAGGAGATAACCGGAGTAAACCGGACGGT 498
| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 408 AAGCTTGCAAGACCGGACAGTTTGTGCTCCAAAGGAGATTACCGGAGTAAACCGGACGGT 467
Query 499 ATTCCGGGATAACGCTGCGGAGTTGGTGAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 558
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 468 ATTTCGGGATAACGCTGCAGAGTTGGTTAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 527
Query 559 TGGATTCTATGCTGGTTTTGTGGATAGACATAATGTGACGGTTCACGGTCTGGCTCAGTG 618
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 528 TGGATTCTATGCTGGTTTTGTGGATAGACATAACGTGACGGTTCATGGTCTGGCTCAGTG 587
Query 619 TTGGGAGACTCTTAATCGTAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGTAT 678
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 588 TTGGGAGACTCTTAATAGAAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGGAT 647
Query 679 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGTTATATGAGATT 738
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 648 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGCTATATGAGGTT 707
Query 739 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCCACATCAGATGGTAATGGTGGTCA 798
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 708 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCTACATCAGATGGTAATGGTGGTCA 767
Query 799 TAACCATTTGGGTGTGATTTTGGCGGTGACATCTTCGGTTGTGGCATTTGTTCTGTTGGT 858
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 768 TAACCATTTGGGTGTGATTTTGGCGGTGACATCTTCGGTTGTGGCTTTTGTTCTGTTGGT 827
Query 859 CTCTGCCGCTGGTTTCTTGCTTAAAAAGAGACATGCCAAGAAGCAAAGAGAGAAGAAGCA 918
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 828 CTCTGCCGCTGGTTTCTTGCTTAAAAAGAGACACGCCAAGAAGCAAAGAGAGAAGAAGCA 887
Query 919 GCTAGGGTCATTATTCATGCTTGCAAACAAATCTAATCTCTGTTTCTCCTATGAGAATCT 978
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 888 ACTAGGGTCATTATTCATGCTTGCGAACAAATCTAATCTCTGTTTCTCCTATGAGAATCT 947
Query 979 CGAGAGGGCTACCGATTACTTCAGCGATAAAAATAAGTTAGGACAAGGAGGATCTGGCTC 1038
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 948 CGAGAGGGCTACCGATTACTTCAGCGACAAAAATAAGTTAGGACAAGGAGGATCTGGCTC 1007
Query 1039 TGTCTATAAGGGAGTTCTTACTAACGGTAAGACTGTTGCGGTAAAGAGACTGTTCTTCAA 1098
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1008 TGTCTATAAGGGAGTTCTTACTAATGGTAAGACTGTTGCAGTAAAGAGACTGTTCTTCAA 1067
Query 1099 CACAAAGCAATGGGTGGATCATTTCTTTAACGAAGTCAATTTAATAAGCCAAGTCA-ATC 1157
||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| | | |
Sbjct 1068 CACAAAGCAATGGGTGGATCATTTCTTCAACGAAGTTAATCTAATAAGCCAAGT-AGACC 1126
Query 1158 ACAAGAACCTTGTGAAGCTCTTGGGATGCAGCATAACTGGACCAGAGAGCCTTCTGGTGT 1217
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1127 ACAAGAACCTTGTTAAGCTCTTGGGATGCAGCATAACTGGACCAGAGAGCCTTCTGGTCT 1186
Query 1218 ATGAATACATTGCAAATCAAAGCCTCCACGACTATCTTTTTGTAAGAAAAGATGTTCAAC 1277
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1187 ATGAATACATTGCAAATCAAAGCCTCCACGACTATCTTTTCGTAAGAAAAGATGTTCAAC 1246
Query 1278 CGTTGAATTGGGCGAGGAGATTCAAGATTATACTTGGTACAGCAGAAGGAATGGCGTATC 1337
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 CGTTGAATTGGGCAAAGAGATTCAAGATTATACTTGGTACAGCAGAAGGAATGGCGTATC 1306
Query 1338 TTCACGAGGAGTCGAATCTTAGAATCATACATAGAGACATTAAGCTGAGCAATATCCTTT 1397
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1307 TTCACGAGGAGTCAAATCTTAGAATCATACATAGAGATATTAAGCTGAGTAATATCCTTT 1366
Query 1398 TGGAAGATGATTTTACTCCAAGAATTGCTGATTTTGGATTGGCTAGATTGTTCCCAGAGG 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 TGGAAGATGATTTTACTCCAAGAATTGCTGATTTTGGATTGGCTAGATTGTTCCCAGAGG 1426
Query 1458 ACAAGACTCATATTAGCACCGCCATCGCCGGGACACTAGGCTACATGGCTCCAGAATATG 1517
||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1427 ACAAGACTCATATCAGCACTGCCATCGCCGGTACACTAGGCTACATGGCACCAGAATATG 1486
Query 1518 TAGTACGAGGAAAACTGACCGAGAAAGCAGACGTTTACAGTTTCGGAGTTCTTATGATTG 1577
|||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1487 TAGTACGAGGAAAACTAACTGAGAAAGCAGACGTTTATAGTTTTGGAGTTCTTATGATTG 1546
Query 1578 AAGTTATAACCGGAAAACGTAACAACGCCTTCGTACAAGAAGCTGGTTCGATCCTACAAA 1637
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1547 AAGTTATAACCGGAAAACGTAACAATGCCTTCGTACAAGACGCTGGTTCGATCCTACAAT 1606
Query 1638 CGGTATGGAGTCTGTACAGAACAAGAAATCTGGAAGAAGCAGTGGATCCAATCTTGGGGG 1697
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| || |
Sbjct 1607 CGGTATGGAGTCTGTACAGAACAAGCAATGTGGAAGAGGCAGTGGATCCAATCTTAGGTG 1666
Query 1698 ATAACTTCAACAAGATAGAAGCGTCACGGCTACTTCAAATCGGGCTTCTCTGCGTTCAAG 1757
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1667 ATAACTTCAACAAGATAGAAGCGTCACGGCTACTTCAAATTGGGCTTCTCTGTGTTCAAG 1726
Query 1758 CAGCGTTTGATCAGCGGCCTGCGATGTCTGCGGTTGTGAAAATGATGAAAGGGAGTTTGG 1817
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1727 CAGCGTTTGATCAGCGGCCTGCGATGTCTGTGGTTGTGAAAATGATGAAAGGGAGTTTGG 1786
Query 1818 AGATTCACACACCGACGCAACCGCCGTTTCTGAATCCAGGGAGTGTAGTAGAGATGAGGA 1877
||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 1787 AGATTCATACGCCGACGCAACCACCGTTTCTGAATCCAGGAAGTGTAGTAGAGATGAGAA 1846
Query 1878 AGATGATGATGACTCCCACGACGAATCAGTCTAATTCTTCAGGATCGAGGAGTGACTACA 1937
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1847 AGATGATGATGACTCCCACGACGAATCAGTCTAATTCTTCAGGATCAAGGAGTGACTACA 1906
Query 1938 TAACCGAGGGTTCGAGTTTCTTCGAACCTAGAT 1970
|||||||||||||||||||||| ||||||||||
Sbjct 1907 TAACCGAGGGTTCGAGTTTCTTTGAACCTAGAT 1939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98694271470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5