BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926384
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70570.2 | Symbols: | anthranilate phosphoribosyltransferas... 2146 0.0
> AT1G70570.2 | Symbols: | anthranilate phosphoribosyltransferase,
putative | chr1:26608625-26612309 FORWARD LENGTH=2240
Length=2240
Score = 2146 bits (1162), Expect = 0.0
Identities = 1314/1387 (95%), Gaps = 11/1387 (1%)
Strand=Plus/Plus
Query 1 TTCAGGCGAGA-AAAAT-AATCTGATGAAAGCTCTTCTAAATCCTGAATCTTTCTTTTGT 58
||||||||||| | ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 71 TTCAGGCGAGAGACAATCAATCTGATGAAAGCTCTTCTAAATCCTGAATCTTCCTTTTGT 130
Query 59 CTCTCGTCGATCTCTTCCTCACAGATCAAGAGGTCTCTCCA-TTTCAACGGACTGAGTTC 117
|| || ||||| |||||||||||||||||||||||| | || ||| |||||| ||||
Sbjct 131 CTTTCTTCGATTTCTTCCTCACAGATCAAGAGGTCTTTACACTTT-AACGGATTGAG--- 186
Query 118 TTCTTCATGTCTCCGGTTTGCTTTAACCGATTGTGGCGGCCG--TACGCAGCAGCGGAAG 175
||||||||||||||||||| |||||||||||| || ||| || |||| || |||||||
Sbjct 187 TTCTTCATGTCTCCGGTTTCCTTTAACCGATTTTGCCGGACGTTTACG--GCGGCGGAAG 244
Query 176 CTCACTGGTGGGTTGAGTATAAAGGCAGTGTTGGACTCTGCAATGATGGAGCAGTTAGGG 235
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 245 CTCACTGGTGGGTTGTGTATAAAGGCAGTTTTGGACTCTGCAATGATGGAGCAGTTAGGG 304
Query 236 CTTAAGGAATCTGATGTAAAGAATCCGGCTTTATCTTCTACTTATCGGGGATCGGAGATT 295
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CTTAAGGAATCAGATGTTAAGAATCCGGCTTTATCTTCTACTTATCGGGGATCGGAGATT 364
Query 296 CCGAAGCCAAACCTTACGGTTCTTGATGCTCAAGCTAGGGTTTGTACAGGGCCGACTCAG 355
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 365 CCGAAGCCAAACCTTACTGTTCTTGATGCTCAAGCTAGGGTTTGTACAGGTCCGACTCAG 424
Query 356 ACTAGGCCTCTTAGTGAAGAACAAGCTTTTAAGGTGTTTGATACTATTTTAAGATCAGCT 415
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 425 ACTAGGCCTCTTAGTGAAGAACAAGCTTTTAAGGTGTTTGATACTATATTAAGATCAGCT 484
Query 416 AGAGGGGAGCTGAAAGACGAGGAACCAGTTTCAAAGGCGCAACTTGGGGCATTTTTTGCG 475
||||||||||| ||||| || || || ||||||||||||||||||||||| |||||||||
Sbjct 485 AGAGGGGAGCTAAAAGATGAAGAGCCTGTTTCAAAGGCGCAACTTGGGGCTTTTTTTGCG 544
Query 476 GGAATGACAATACGTGCAAATGCATTTCCAGAGGAAACTCAATGGAGCGAAGGTGAAAAG 535
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 545 GGAATGACAATACGTGCAAATGCATTTCCGGAGGAAACTCAATGGAGCGAAGGGGAAAAG 604
Query 536 CGGGCGATGGATGTGTTTTGGCCACTCTTGGTTCGGGCATTACCTCCTGATGTGCTCTTT 595
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 605 CGGGCGATGGATGTGTTTTGGCCACTCTTGGTTAGGGCACTACCTCCTGATGTGCTCTTT 664
Query 596 ATTGTTGATCCCGAAGGCTCTCTTTTGGGTACGGGAAATTCTGTTGGACCAACTTTTGTT 655
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 ATTGCTGATCCTGAAGGCTCTCTTTTGGGTACGGGAAATTCTGTTGGACCAACTTTTGTT 724
Query 656 GGCAATGAAACTAGAGAGATGAGATTGGTTGGCGCGCTAAGAGAGATTTTGGCTGGAGGT 715
|| ||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 725 GGTAATGAAACTCGTGAGATGAGATTGGTTGGTGCGCTTAGAGAGATTTTGGCTGGAGGT 784
Query 716 CACCTGGGTTATGAGGAGGTTAAGGGTGTTTTAAGAGATGTTCTTCCGCTTGCAACGGAA 775
||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 785 CACTTAGGTTATGAGGAGGTTAAGGGTGTTTTAAGAGACGTTCTTCCGCTTGAAACGGAA 844
Query 776 GGTAGTTTGAACTTGGGAGTAAGCGAGTCATTGCTTTCGGCGTTTTTGATTGGGCAACGT 835
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 845 GGTAGTTTAAACTCGGGAGTAAGCGAGTCATTGCTTTCGGCGTTTTTGATTGGTCAACGT 904
Query 836 ATGAACAGAGAAACAGACCGCGAGCTTAAAGCTTACTGCCTTGCATTCGATGACGAACAT 895
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 ATGAACAGAGAAACAGATCGCGAGCTTAAAGCTTACTGCCTTGCATTCGATGACGAACAT 964
Query 896 GGGGCTCCTCCAATTGCTGATGTCAAATCCTTAACCCATTATGGCGAGCCTTATGATGGG 955
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GGGGCTCCTCCAGTTGCTGATGTCAAATCCTTAACCCATTATGGCGAGCCTTATGATGGG 1024
Query 956 AATACTCGATTCTTTCGAAGCACACTGTTTGTGGCTACAGTTAGATCCTGCTATGGTGAA 1015
||||||||||||||||||||||| |||||||||| |||||||||| |||| |||||||
Sbjct 1025 AATACTCGATTCTTTCGAAGCACTTTGTTTGTGGCCGCAGTTAGATCTTGCTGTGGTGAA 1084
Query 1016 TCTTCATTGCTCCATGGCGTGGAATGGATGCCTCCAAAGGGGGGTGTGACTGAGGAACAA 1075
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1085 TCTTCATTGCTCCATGGCGTGGAATGGATGCCTCCAAAAGGGGGTGTGACTGAGGAACAA 1144
Query 1076 ATGCTGAAGTTTATGGGAGCAAATACACACTTGTCTGTTCAGCAGGCAAAAGAACTCATC 1135
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1145 ATGCTGAAGTTTATGGGAGCAAACACACACTTGTCTGTTCAGCAGGCAAAAGAACTCATC 1204
Query 1136 GAGGACGAGAAGGCTGGATTTGCATATCTCAGTCTACGGGAAGCTCGGCCGTCTTTATAT 1195
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1205 GAGGACGAGAAGGCTGGATTTGCATATCTCAGTCTACGAGAAGCTCGGCCATCTTTATAT 1264
Query 1196 TCGCTAATCGAAATGAGGGAGCATATAAAGAAACGCCCTCCTCTGGCAACAACGGAGAAA 1255
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1265 TCACTAATCGAAATGAGGGAGCATATAAAGAAGCGCCCTCCTCTGGCAACAACGGAGAAA 1324
Query 1256 GTTCAGCAATTTGTGAGGGCGACAGGGAAGGAAGCTATTGTAGCTGGGTTTTACCACGAA 1315
||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 1325 GTTCAGCAATTTGTGAGGGCGACAGGGAAAGAAGCCATTGTTGCTGGGTTTTACCATGAA 1384
Query 1316 GGCTACGAAGAGCCTCTCTTAATGCTTATGAGACGAAGAGGTGTCCATTCTGGTTTGGTG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GGCTACGAAGAGCCTCTCTTAATGCTTATGAGACGAAGAGGTGTCCATTCTGGTTTGGTG 1444
Query 1376 GTTAAGG 1382
|||||||
Sbjct 1445 GTTAAGG 1451
Score = 675 bits (365), Expect = 0.0
Identities = 423/451 (94%), Gaps = 4/451 (1%)
Strand=Plus/Plus
Query 1385 GAGGAGGGGGCCCTCTCAATGACAACACGGGTGCGAGCAGCAAGTGCATCAAAAGGGTTT 1444
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1565 GAGGAGGGGGCCCTTTCAATGACAACACGGGTGCGAGCTGCAAGTGCATCAAAAGGGTTT 1624
Query 1445 CCAGTTAACTACTGTTCTGGATTTCGTTCATTGAGTTCGGACACGGCTCTAGAAGCTGAC 1504
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1625 CCAGTCAACTACTGTTCCGGGTTTCGTTCATTGAGTTCGGACACGGCTCTAGAAGCTGAC 1684
Query 1505 GGGGTCTCACGTCAGAGTTTCAATCTTGAGGTGGATGCAAGAGAA-TATGGCTTTGAACC 1563
|| || || ||||||||||||||||||||||||||||| ||| || ||||| ||||||||
Sbjct 1685 GGTGTATCGCGTCAGAGTTTCAATCTTGAGGTGGATGCGAGA-AACTATGGGTTTGAACC 1743
Query 1564 AACCGAAACTCCACGAACTGATCGTTCGGTGTCAAAGAACATAGAGCTGGGATTGGCAGC 1623
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1744 AACCGAGACTCCACGAACTGATCGTTCGGTGTCAAAGAACATAGAGCTGGGGCTGGCAGC 1803
Query 1624 GCTTCGTGGTGAGAAAGGCGCGACTTATGATAGAATTGTCCTAAATGCTGGGATAGTGGA 1683
|||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 1804 GCTTCGTGGTGAGAAAGGAGCGGCTTATGATAGAATCGTCCTAAATGCTGGGATTGTGGA 1863
Query 1684 TCATTTGTTGGGAGGTGAAGGTGCAGAGGATGTAGCTGTGGCAATGGAGAGAGCAAAGGA 1743
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 CCATTTGTTGGGAAGTGAAGGTGCAGAGGATGTAGCTGTGGCAATGGAGAGAGCAAAGGA 1923
Query 1744 AGCTATTGACAGTGGGAAGGCTTTAAAGAAACTTTTGAATTACATAGAGATCTCACGGAA 1803
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1924 AGCTATTGACAGTGGGAAGGCTTTAAAGAAACTTTTGAATTACATAGAAATCTCACGCAA 1983
Query 1804 GATGAAATAGTTCCAAC-AATCTGGAGAGTC 1833
||| ||||||||| ||| || ||| ||||||
Sbjct 1984 GATAAAATAGTTC-AACCAACCTGAAGAGTC 2013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90712384815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5