BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926397
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70670.1 | Symbols: | Caleosin-related family protein | chr... 1013 0.0
AT1G70680.1 | Symbols: | Caleosin-related family protein | chr... 647 0.0
> AT1G70670.1 | Symbols: | Caleosin-related family protein | chr1:26644582-26646173
FORWARD LENGTH=1039
Length=1039
Score = 1013 bits (548), Expect = 0.0
Identities = 594/617 (96%), Gaps = 0/617 (0%)
Strand=Plus/Plus
Query 9 tctctcATTCCCATCATGGCTTCCTCTATTTCCACTGGAGTGAAATTTGTTCCAGAAGAA 68
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TCTCTCATTCTGATCATGGCTTCCTCTATTTCCACTGGAGTGAAATTTGTTCCAGAAGAA 293
Query 69 GATAATTTCTTGCAAAGACATGTTGCTTTTTTCGATAGGAACAAAGATGGCATCGTTTAT 128
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 294 GATAATTTCTTGCAGAGACATGTCGCTTTTTTCGATAGGAACAAAGATGGTATCGTTTAT 353
Query 129 CCCCCGGAGACATTTCAAGGATTTAGAGCAATTGGGTGTGGATATTTGTTGTCAGCAGTT 188
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CCCTCGGAGACATTTCAAGGATTTAGAGCAATTGGGTGTGGATATTTGTTGTCAGCAGTC 413
Query 189 GCTTCTGTGTTCATAAACATAGGTCTCAGCAGCAAAACTCGTCCGGGTAAAGGATTCTCG 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GCTTCTGTGTTCATAAACATAGGTCTCAGCAGCAAAACTCGTCCGGGTAAAGGATTCTCT 473
Query 249 ATGTTGTTTCCTATAGAGGTTAAGAATATTCACCTTGCCAAACATGGAAGCGATTCAGGA 308
|| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 474 ATCTGGTTTCCTATAGAGGTTAAGAATATTCACCTTGCCAAACACGGAAGCGATTCAGGC 533
Query 309 GTTTACGACAAAGATGGACGGTTTGTGGCTTCGAAGTTTGAGGAGATATTTGCGAAGCAT 368
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 534 GTTTACGACAAAGATGGACGGTTTGTTGCTTCGAAGTTTGAGGAGATATTTACGAAGCAT 593
Query 369 GCACACACACATCGCGATGCTTTGACCAACGAGGAACTCAAACAACTACTAAAGGCAAAC 428
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 594 GCACACACACATCGCGATGCTTTGACCAACGAGGAACTCAAACAACTCCTAAAGGCAAAC 653
Query 429 AAAGAACCTAATGATCGTAAAGGATGGATTGCAGGGTATACGGAGTGGAAGATATTGCAT 488
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 654 AAAGAACCTAATGATCGTAAAGGATGGCTTGCAGGGTATACGGAGTGGAAGGTATTGCAT 713
Query 489 TATTTGTGCAAAGACAAGAACGGTTTGTTGCACAAAGACACAGTGAGAGCTGCCTACGAT 548
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 714 TATTTGTGTAAAGACAAGAATGGTTTGTTGCACAAAGACACAGTGAGAGCTGCCTACGAT 773
Query 549 GGTTCTCTTTTCGAAAAACTCGAGAAACAAAGATCTTCTAAAACTTCTAAGAAACATCCA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGTTCTCTTTTCGAAAAACTCGAGAAACAAAGATCTTCTAAAACTTCTAAGAAACATCCA 833
Query 609 TAAACCCCAATCTAAAT 625
|||| || || |||||
Sbjct 834 TAAATCCTTATTTAAAT 850
> AT1G70680.1 | Symbols: | Caleosin-related family protein | chr1:26647220-26648734
FORWARD LENGTH=893
Length=893
Score = 647 bits (350), Expect = 0.0
Identities = 513/591 (87%), Gaps = 13/591 (2%)
Strand=Plus/Plus
Query 24 ATGGCTTCCTCTATTTCCACTG--G-AGTGAAATTTGTTCCAGAAGAAG-ATAATTTCTT 79
|||||||||||||||||| ||| | ||||||| |||| ||||||| || ||||||||||
Sbjct 122 ATGGCTTCCTCTATTTCCGCTGCTGAAGTGAAAGTTGTCCCAGAAG-AGTATAATTTCTT 180
Query 80 GCAAAGACATGTTGCTTTTTTCGATAGGAACAAAGATGGCATCGTTTATCCCCCGGAGAC 139
||||| |||||| || || ||||| || ||||||||||| |||||||||||| |||||||
Sbjct 181 GCAAAAACATGTCGCCTTCTTCGACAGAAACAAAGATGGTATCGTTTATCCCTCGGAGAC 240
Query 140 ATTTCAAGGATTTAGAGCAATTGGGTGTGGATATTTGTTGTCAGCAGTT-GCTTCTGTGT 198
||||||||||||||||||||| || |||||||||||||||||| || || ||| |||| |
Sbjct 241 ATTTCAAGGATTTAGAGCAATCGGATGTGGATATTTGTTGTCAACA-TTCGCTGCTGTTT 299
Query 199 TCATAAACAT-AGGTCTCAGCAGCAAAACTCGTCCGGGTAAAGGATTCTCGATGT-T-GT 255
|||| ||||| || |||||||||||||||||||||||| ||||||||||| || | | ||
Sbjct 300 TCATCAACATCAG-TCTCAGCAGCAAAACTCGTCCGGGGAAAGGATTCTC-AT-TCTCGT 356
Query 256 TTCCTATAGAGGTTAAGAATATTCACCTTGCCAAACATGGAAGCGATTCAGGAGTTTACG 315
|||| ||||||||||||||| | | ||| | | |||| | ||||||||||| |||||||
Sbjct 357 TTCCGATAGAGGTTAAGAATGTCCGCCTAGGGATACATAGCAGCGATTCAGGCGTTTACG 416
Query 316 ACAAAGATGGACGGTTTGTGGCTTCGAAGTTTGAGGAGATATTTGCGAAGCATGCACACA 375
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 417 ACAAGGATGGACGGTTTGTGGCTTCAAAGTTCGAGGAGATATTTGCGAAGCATGCTCACA 476
Query 376 CACATCGCGATGCTTTGACCAACGAGGAACTCAAACAACTACTAAAGGCAAACAAAGAAC 435
||||||||||||||||||||| | ||||||| ||| |||| || |||||||||| |||||
Sbjct 477 CACATCGCGATGCTTTGACCAGCAAGGAACTTAAAGAACTTCTCAAGGCAAACAGAGAAC 536
Query 436 CTAATGATCGTAAAGGATGGATTGCAGGGTATACGGAGTGGAAGATATTGCATTATTTGT 495
|||||||| |||||||| ||||| || || | |||||||||| ||||| || ||||||
Sbjct 537 CTAATGATTGTAAAGGAGGGATTTTAGCGTTTGGGGAGTGGAAGGTATTGTATAATTTGT 596
Query 496 GCAAAGACAAGAACGGTTTGTTGCACAAAGACACAGTGAGAGCTGCCTACGATGGTTCTC 555
|||||||||||| |||||| | ||||| || | ||||||||| | ||| ||||||||||
Sbjct 597 GCAAAGACAAGAGTGGTTTGCTACACAAGGAGATAGTGAGAGCCGTCTATGATGGTTCTC 656
Query 556 TTTTCGAAAAACTCGAGAAACAAAGATCTTCTAAAACTTCTAAGAAACATC 606
|||||||| ||||||||||||||||||||||||||||| || |||| ||||
Sbjct 657 TTTTCGAACAACTCGAGAAACAAAGATCTTCTAAAACTCCTTAGAATCATC 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30441893082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5