BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926398
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70680.1 | Symbols: | Caleosin-related family protein | chr... 924 0.0
AT1G70670.1 | Symbols: | Caleosin-related family protein | chr... 701 0.0
> AT1G70680.1 | Symbols: | Caleosin-related family protein | chr1:26647220-26648734
FORWARD LENGTH=893
Length=893
Score = 924 bits (500), Expect = 0.0
Identities = 576/613 (94%), Gaps = 3/613 (0%)
Strand=Plus/Plus
Query 1 TTTTCTCTATATCTCTGATTATGGCTTCCTCTATTCCCACTGCTGAAGTGAAAGTTGTTC 60
|||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 102 TTTTCTCTCTATCTGTGATTATGGCTTCCTCTATTTCCGCTGCTGAAGTGAAAGTTGTCC 161
Query 61 CAGAAAAAG-ATAATTTCTTGCAAAGACATGTCGCCTACTTCGACAGAAATAAAGATGGC 119
||| || || ||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 162 CAG-AAGAGTATAATTTCTTGCAAAAACATGTCGCCTTCTTCGACAGAAACAAAGATGGT 220
Query 120 ATCGTTTATCCCTCAGAGACATTTCAAGGATTTAGAGCAATCGGATGTGGATATTTGTTG 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 ATCGTTTATCCCTCGGAGACATTTCAAGGATTTAGAGCAATCGGATGTGGATATTTGTTG 280
Query 180 TCAGCATTCGCTGCCGTGTTCATCAACATCAGTCTCAGCAGCAAAACTCGTCCGGGGAAA 239
||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 TCAACATTCGCTGCTGTTTTCATCAACATCAGTCTCAGCAGCAAAACTCGTCCGGGGAAA 340
Query 240 GGATTCTCATTCTCGTTTCCGATAGAGGTTAAGAATATCAACCTTGGCATACATAGCAGC 299
|||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||
Sbjct 341 GGATTCTCATTCTCGTTTCCGATAGAGGTTAAGAATGTCCGCCTAGGGATACATAGCAGC 400
Query 300 GATTCAGGCGTTTACGACAAAGATGGACGGTTTGTGGCTTCGAAGTTCGAGGAGATATTT 359
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 401 GATTCAGGCGTTTACGACAAGGATGGACGGTTTGTGGCTTCAAAGTTCGAGGAGATATTT 460
Query 360 GCGAAGCATGCTCACACACATCGTGATGCTTTGACCAACAAGGAACTTAAAGAACTTCTC 419
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 461 GCGAAGCATGCTCACACACATCGCGATGCTTTGACCAGCAAGGAACTTAAAGAACTTCTC 520
Query 420 AAGGCAAACAGAGAACCTAATGATTGTAGAGGAGGAATTTTAGCATTTGGGGAGTGGAAG 479
|||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||
Sbjct 521 AAGGCAAACAGAGAACCTAATGATTGTAAAGGAGGGATTTTAGCGTTTGGGGAGTGGAAG 580
Query 480 GTATTGTATAATTTGTGCAAAGACAAGAACGGTTTGCTACACAAAGAGACAGTGAGAGCC 539
|||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 581 GTATTGTATAATTTGTGCAAAGACAAGAGTGGTTTGCTACACAAGGAGATAGTGAGAGCC 640
Query 540 GTCTATGATGGGTCTCTTTTCGAACAACTCGAGAAACAAAGATCTTCTCAAACTCCTAAG 599
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 641 GTCTATGATGGTTCTCTTTTCGAACAACTCGAGAAACAAAGATCTTCTAAAACTCCTTAG 700
Query 600 AATCATTCATAAA 612
|||||| || |||
Sbjct 701 AATCAT-CAAAAA 712
> AT1G70670.1 | Symbols: | Caleosin-related family protein | chr1:26644582-26646173
FORWARD LENGTH=1039
Length=1039
Score = 701 bits (379), Expect = 0.0
Identities = 549/630 (87%), Gaps = 15/630 (2%)
Strand=Plus/Plus
Query 1 TTTTCTCTATATCTCTGATTATGGCTTCCTCTATTCCCACTGCTGAAGTGAAAGTTGTTC 60
|||||||| || |||||| ||||||||||||||| |||||| | ||||||| ||||||
Sbjct 231 TTTTCTCT-CAT-TCTGATCATGGCTTCCTCTATTTCCACTG--G-AGTGAAATTTGTTC 285
Query 61 CAGAAAAAGATAATTTCTTGCAAAGACATGTCGCCTACTTCGACAGAAATAAAGATGGCA 120
||||| |||||||||||||||| ||||||||||| | ||||| || || |||||||| |
Sbjct 286 CAGAAGAAGATAATTTCTTGCAGAGACATGTCGCTTTTTTCGATAGGAACAAAGATGGTA 345
Query 121 TCGTTTATCCCTCAGAGACATTTCAAGGATTTAGAGCAATCGGATGTGGATATTTGTTGT 180
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 346 TCGTTTATCCCTCGGAGACATTTCAAGGATTTAGAGCAATTGGGTGTGGATATTTGTTGT 405
Query 181 CAGCATTCGCTGCCGTGTTCATCAACATCA-GTCTCAGCAGCAAAACTCGTCCGGGGAAA 239
||||| ||||| | |||||||| ||||| | ||||||||||||||||||||||||| |||
Sbjct 406 CAGCAGTCGCTTCTGTGTTCATAAACAT-AGGTCTCAGCAGCAAAACTCGTCCGGGTAAA 464
Query 240 GGATTCTCAT-TCTCGTTTCCGATAGAGGTTAAGAATA-TCAACCTTGGCATACATAGCA 297
|||||||| | ||| |||||| |||||||||||||||| || |||||| || ||| | |
Sbjct 465 GGATTCTC-TATCTGGTTTCCTATAGAGGTTAAGAATATTC-ACCTTGCCAAACACGGAA 522
Query 298 GCGATTCAGGCGTTTACGACAAAGATGGACGGTTTGTGGCTTCGAAGTTCGAGGAGATAT 357
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 523 GCGATTCAGGCGTTTACGACAAAGATGGACGGTTTGTTGCTTCGAAGTTTGAGGAGATAT 582
Query 358 TTGCGAAGCATGCTCACACACATCGTGATGCTTTGACCAACAAGGAACTTAAAGAACTTC 417
|| |||||||||| ||||||||||| ||||||||||||||| ||||||| ||| |||| |
Sbjct 583 TTACGAAGCATGCACACACACATCGCGATGCTTTGACCAACGAGGAACTCAAACAACTCC 642
Query 418 TCAAGGCAAACAGAGAACCTAATGATTGTAGAGGA-GGAATTTTAGCATTTGGGGAGTGG 476
| |||||||||| ||||||||||||| ||| |||| || || || | | |||||||
Sbjct 643 TAAAGGCAAACAAAGAACCTAATGATCGTAAAGGATGGC-TTGCAGGGTATACGGAGTGG 701
Query 477 AAGGTATTGTATAATTTGTGCAAAGACAAGAACGGTTTGCTACACAAAGAGACAGTGAGA 536
||||||||| || ||||||| ||||||||||| |||||| | |||||||| |||||||||
Sbjct 702 AAGGTATTGCATTATTTGTGTAAAGACAAGAATGGTTTGTTGCACAAAGACACAGTGAGA 761
Query 537 GCCGTCTATGATGGGTCTCTTTTCGAACAACTCGAGAAACAAAGATCTTCTCAAACTCCT 596
|| | ||| ||||| |||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 762 GCTGCCTACGATGGTTCTCTTTTCGAAAAACTCGAGAAACAAAGATCTTCTAAAACTTCT 821
Query 597 AAGAATCATTCATAAATC-TTAATGTAAAT 625
||||| ||| |||||||| ||| | |||||
Sbjct 822 AAGAAACATCCATAAATCCTTATT-TAAAT 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30492127229
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5