BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926406
Length=2317
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70750.1 | Symbols: | Protein of unknown function, DUF593 |... 2401 0.0
AT5G16720.1 | Symbols: | Protein of unknown function, DUF593 |... 154 4e-36
> AT1G70750.1 | Symbols: | Protein of unknown function, DUF593
| chr1:26679975-26683204 REVERSE LENGTH=2957
Length=2957
Score = 2401 bits (1300), Expect = 0.0
Identities = 1593/1730 (92%), Gaps = 38/1730 (2%)
Strand=Plus/Plus
Query 593 tgatgatgatgaGGAGGAGGAGGAGTTTTCGTGCTATGTATCAAGTTTCGACTGTAATAG 652
||| |||||||| | || ||||||||||| |||||||||||||| ||||| ||||| |
Sbjct 609 TGAAGATGATGATGTTGATGAGGAGTTTTCATGCTATGTATCAAGCTTCGATTGTAAGAA 668
Query 653 CAAAGAAATTGCAGCAGAGAAGGAAGAAGACAACAAAGTGGATCTGGCTATAGAGGTTAA 712
||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||| |
Sbjct 669 CAAAGAAATTGCAACAGAGAAGGAAGAAGAAAACAGAGTGGATCTACCTATAGAGGTGGA 728
Query 713 AACTGCAGAATCAGCGCCTAAAAACCTTGAGTTCTATATTGATGAAGAAGACTGTCATTT 772
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 729 AACTGCAGAATCAGCTCCGAAAAACCTCGAGTTCTATATTGATGAAGAAGACTGTCATTT 788
Query 773 GATTCCAGTTGAATTCTACAAACAGAGCGAAGAAGTTCGAGAGATTTCCGATGTTAACGG 832
|||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||
Sbjct 789 GATTCCAGTTGAATTCTATAAACCGAGTGAAGAAGTTCGAGAGATTTCCGACATTAACGG 848
Query 833 AGATTTTATACTCGATTTCGGCGTTGAGCCTGATTTCACAGCGGCGG-AG-GA-GGAGGG 889
||||||||| ||||||||||||||||||| ||||||||| ||||||| | || |||||
Sbjct 849 AGATTTTATCCTCGATTTCGGCGTTGAGCATGATTTCACGGCGGCGGCGGAGACGGAGGA 908
Query 890 AATCTCCGCCTTTGCTTCGCCGGATGATTCGAAACCGGACGATGCGGGGACGAATCTAGG 949
|||||||| |||||||||||||| ||| ||||||||||| ||||| | |||||||||||
Sbjct 909 AATCTCCGACTTTGCTTCGCCGGGTGAATCGAAACCGGAGGATGCAGAGACGAATCTAGT 968
Query 950 TGCTTCGTCAGATGATTTAGTGCAAATGCAAAACGACGACGAAGATACAGACGACGCTGA 1009
||||||| || | | || | |||||||||||||||| | | | ||||| ||
Sbjct 969 TGCTTCG---GA--A---A-TG-----G-AAAACGACGACGAAGA-A-ACA-GACGCAGA 1010
Query 1010 GGTTTCTATAGGCACAGAAATTCCTGATCATGAGCAAATCGGAGAGATTCCTTCGCACCA 1069
|||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1011 GGTTTCTATAGGTACAGAGATTCCTGATCATGAGCAAATCGGAGATATTCCTTCTCACCA 1070
Query 1070 ACTCATTCCTCACGACGATGACGATGATCATGAGGAGGATATGTTGGAGTTCAAAACAGT 1129
|||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1071 GCTCATTCCTCACCACGATGACGATGATCATGAGGAGGAAACGTTGGAGTTCAAAACAGT 1130
Query 1130 TACGATTGAAACC-AGAATGCCCGTCTTAAACGTCAACGAAGAGCGGATTTTAGAAACTC 1188
|||||||||||| || ||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 1131 AACGATTGAAACCAAG-ATGCCAGTCTTAAACATCAACGAAGAGCGGATTTTAGAAGCTC 1189
Query 1189 AAGGCTCGATGGAAAGCTCGC--A-TAGTCTACATAACGCTATGTTTCACTTAGAGCGAA 1245
||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 1190 AAGGCTCGATGGAAAGCTCGCATAGTAGTCTACATAACGCTATGTTTCACTTAGAGCAAA 1249
Query 1246 GAGTATCCT-TTGACGGTATTGAATGTCCTGAAGGAGTACTCACCGTGGATAAGTTGAAG 1304
|||||| || |||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1250 GAGTAT-CTGTTGATGGTATTGAATGTCCTGAAGGAGTACTCACTGTTGATAAGTTGAAG 1308
Query 1305 TTGGAGTTACAAGAAGAGAGAAAAGCACTTAACGCGTTATACGAGGAGCTGGAGGTAGAG 1364
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1309 TTTGAGTTACAAGAAGAGAGAAAAGCACTTCACGCGTTATACGAGGAGCTGGAGGTAGAG 1368
Query 1365 AGGAGTGCGTCTGCGGTTGCTGCCAGTGAAACAATGGCGATGATCAATAGGTTGCATGAG 1424
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 AGGAATGCGTCTGCTGTTGCTGCCAGTGAAACAATGGCGATGATCAATAGGTTGCATGAG 1428
Query 1425 GAGAAAGCTGCGATGCAGATGGAAGCGTTGCAGTATCAGAGAATGATGGAGGAGCAAGCT 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 GAGAAAGCTGCGATGCAGATGGAAGCGTTGCAGTATCAGAGAATGATGGAGGAGCAAGCT 1488
Query 1485 GAGTTTGATCAAGAAGCCTTGCAGTTGTTGAATGAGCTTATGGTGAATCGAGAGAAGGAG 1544
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1489 GAGTTTGATCAAGAAGCTTTGCAGTTGTTGAATGAGCTTATGGTGAATAGAGAGAAGGAG 1548
Query 1545 AATGTTGAGCTAGAGAAGGAGCTAGAGGTGTATAGAAAGAGAATGGAGGAGTATGAAGCT 1604
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 AATGCTGAGCTTGAGAAGGAGCTAGAGGTGTATAGAAAGAGAATGGAGGAGTATGAAGCT 1608
Query 1605 AAAGAGAAAATGGGGATGTTGAGGAGGAGAATCAGAGATTCCTCTGTTGATTCGTATAGA 1664
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1609 AAAGAGAAAATGGGGATGTTGAGGAGGAGATTGAGAGATTCCTCTGTTGATTCGTATAGA 1668
Query 1665 AATAATGGCGATTCAGATGAGAATAACAATGGAGAGTTACA-TCATAAGAATGTTGAAGG 1723
|||||||||||||| |||||||||| ||||||||||||||| | |||||| ||||||||
Sbjct 1669 AATAATGGCGATTCTGATGAGAATAGCAATGGAGAGTTACAGTT-TAAGAACGTTGAAGG 1727
Query 1724 AGTTACGGATTGGAAATATATAGAGAATGAGATGGAGAACACGCCGGTTGATGTTGTTCT 1783
||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| ||
Sbjct 1728 GGTTACGGATTGGAAATATAGAGAGAATGAGATGGAGAATACGCCGGTGGATGTTGTACT 1787
Query 1784 TCGTCTTGATGAGTGTTTAGATGATTATGACGGAGAGAGGCTTTCGATTCTTGGGAGATT 1843
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1788 TCGTCTTGATGAGTGTTTAGATGATTATGATGGAGAGAGGCTTTCGATTCTTGGGAGATT 1847
Query 1844 GAAGTTTCTTGAAGAGAAACTCACAGATCTCAATAACGAAGAGGACGACGAGGAGGAAGC 1903
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1848 GAAGTTTCTTGAAGAGAAACTCACAGATCTTAATAACGAAGAGGACGACGAGGAGGAGGC 1907
Query 1904 TAAAACGTTTGAGAATAATGGTAGCATCAATGGAAATGGGCATATTCATGGCAAGGAAAC 1963
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1908 TAAAACGTTTGAGAGTAATGGTAGCATCAATGGAAATGAGCATATTCATGGCAAAGAAAC 1967
Query 1964 AAACGGAAAGCACAGAGTCATCAAGTCAAAGAGACTACTTCCCCTGTTTGATGCGGTCGA 2023
|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1968 AAACGGGAAGCACAGAGTTATCAAGTCAAAGAGATTACTTCCCCTGTTTGATGCGGTCGA 2027
Query 2024 TGGAGAGATGGAAAACGGGTTA-GATAACGGAAACCATCACGAAAACGGGTTTGATGAAT 2082
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 2028 TGGAGAGATGGAAAACGGGTTAAG-TAACGGAAACCATCACGAAAACGGGTTTGATGATT 2086
Query 2083 CAGAGAATGGTGCGATTGTGACGATAGAAGAAGAAGTGGATGAGCTATACGAAAGGCTAG 2142
| ||||| |||| || |||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 2087 CGGAGAAGGGTGAGAATGTGACGATAGAAGAAGAAGTGGATGAGCTTTACGAGAGGTTAG 2146
Query 2143 AAGCTCTAGAGGCAGATAGAGAGTTCTTGAGGCATTGTGTTGGTTCATTGAAAAAAGGAG 2202
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2147 AAGCTCTAGAGGCAGATAGAGAGTTCTTAAGACATTGTGTTGGTTCATTGAAAAAAGGAG 2206
Query 2203 ACAAAGGTGTACATCTCCTCCATGAGATTCTACGACAT-TTACGTGATCTAAGGAATATC 2261
||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||||
Sbjct 2207 ACAAAGGTGTACATCTCCTCCATGAGATTCTGCAACATCTT-CGTGATCTAAGGAATATC 2265
Query 2262 GATCTTATTCGCGTCAAAGAAAATGGAGACATATGAGTGTTTTTGAGTTT 2311
||||||| |||||||| |||||| |||||||| |||| || | ||||||
Sbjct 2266 GATCTTACTCGCGTCAGAGAAAACGGAGACAT--GAGT-TTAT-GAGTTT 2311
Score = 545 bits (295), Expect = 5e-154
Identities = 436/498 (88%), Gaps = 33/498 (7%)
Strand=Plus/Plus
Query 1 AGCTTTCTTCATCGTCGTCCATGGCGGCTAACAAATTCGCGACACTGATTCACCGGAAAA 60
||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 38 AGCTTTCTTTATCGTCGTCTATGGCGGCTAACAAATTCGCGACTCTGATTCATCGGAAAA 97
Query 61 CAAACCGAATCACTCTAATTCTCGTATACGCTTTCCTCGAATGGtcactcatcttcttca 120
|||||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 98 CAAACCGAATCACTTTAATCCTCGTATACGCTTTTCTCGAATGGTCACTCATTTTCTTCA 157
Query 121 ttctt-ctcaactctctcttctcatatttcatcctcaGATTCGCTGATTATTTCGGTCTT 179
|| || |||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 158 TT-TTGCTCAACTCTCTCTTTTCTTATTTCATACTCAGATTCGCTGATTATTTCGGTCTT 216
Query 180 AAACGTCCTTGTCTCTTCTGCTCTAGACTCGATCGTTTCTTCGATGCTTCTGGTAAATCT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 AAACGTCCTTGTCTCTTCTGCTCTAGACTCGATCGTTTCTTCGATGCTTCTGGTAAATCT 276
Query 240 CCTTCTCATAAAGATCTTCTCTGCGATGATCATGCTCTCGAGATT---T-CAAAATCACA 295
||||||||| |||||||||||||||||||||||||||| | ||| | ||||| |
Sbjct 277 CCTTCTCATCGAGATCTTCTCTGCGATGATCATGCTCTCCA-ATTACATTCAAAACCTG- 334
Query 296 TTCAA-AACCT----GT--T---GAAGAATCTCACAATGAATTGGTTCATCATCGTCGTT 345
|| || || || || | | ||||| ||||||||| |||||||||| || |
Sbjct 335 TTGAAGAATCTAATTGTGGTTTCGGAGAATTTCACAATGATTTGGTTCATC---GT-G-- 388
Query 346 GTTGTTGCGTAGAGAAGATAAGTTCTTCACTATTTTGTTGTGCTCCGATAATTGAGTCTG 405
||||||||||||||||||||||||| ||||||| || | ||||||| | |||||||
Sbjct 389 GTTGTTGCGTAGAGAAGATAAGTTCGTCACTAT---GT-G--CTCCGAT--T-GAGTCTG 439
Query 406 ATTTTGGGGATTTAGGTTATCCGATTGGTGATGAAGGTCAAATTTACAATGGTCTTAAGT 465
| |||||| |||||| |||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 440 ACTTTGGGAATTTAGATTATCCAATTGGAGATGAAGGTCAGATTTACAATGGTCTTAAGT 499
Query 466 TTCCTCGATCGATCTTCG 483
||||||||||||||||||
Sbjct 500 TTCCTCGATCGATCTTCG 517
> AT5G16720.1 | Symbols: | Protein of unknown function, DUF593
| chr5:5494228-5496810 FORWARD LENGTH=2357
Length=2357
Score = 154 bits (83), Expect = 4e-36
Identities = 131/154 (85%), Gaps = 4/154 (3%)
Strand=Plus/Plus
Query 1395 ACAATGGCGATGATCAATAGGTTGCATGAGGAGAAAGCTGCGA-TGCAGATGGAAGCGTT 1453
|||||||| ||||||| ||| | || || |||||||| | | | ||||||||||||||
Sbjct 1255 ACAATGGCAATGATCACGAGGCTACAAGAAGAGAAAGC-GAAAGTTCAGATGGAAGCGTT 1313
Query 1454 GCAGTATCAGAGAATGATGGAGGAGCAAGCTGAGTTTGATCAAGAAGCCTTGCAGTTGTT 1513
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| | ||
Sbjct 1314 GCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTGCAGCTATT 1373
Query 1514 GAATGAGCTT-ATGGTGAATCGAGAGAAGGAGAA 1546
|||| | || |||||||| |||||||| |||||
Sbjct 1374 GAATCAT-TTGATGGTGAAACGAGAGAAAGAGAA 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115009448595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5