BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926407
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70760.1 | Symbols: CRR23 | inorganic carbon transport prote... 911 0.0
> AT1G70760.1 | Symbols: CRR23 | inorganic carbon transport protein-related
| chr1:26687230-26688384 FORWARD LENGTH=796
Length=796
Score = 911 bits (493), Expect = 0.0
Identities = 578/619 (93%), Gaps = 5/619 (1%)
Strand=Plus/Plus
Query 1 GAACAGACAGAAACATAGAGATGAGCCGTTGCGGCTCTCTTGGGCTCTATGCCCCGAATG 60
||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 19 GAACA-ACAGACACATAGAGATGAGCCGGTGCGGCTCTCTTGGGCTCTATGCCCCAAATG 77
Query 61 CTTTGCCATCTCTCTCCTTGAAGCCTCGCAGTGTGAAATCTCCTCTCTGTGTTACATCTT 120
||||||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||
Sbjct 78 CTTTGCCATCTCTCTCCTTGAAGCCACGCAGTGTCAAATCTCCTTTCTGTATTACATCTC 137
Query 121 ACTCCAAACCAAACGATACTCTTCTTCATAATGTTGCCAAGATGAGAGCAAAGGCCGGTG 180
|| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 138 ACACCAAACCCAACGACACTCTTCTTCATAATGTTAACAAGATGAGAGCAAAGGCCTGTG 197
Query 181 ATTTATTTGGAGAAAAGAAGACAGTTTTGGCAGCTCAACTCGGGGCAGTTCTTGCCACGA 240
|| || |||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 198 ATATACTTGGAGCAAAGAAGACAATCTTGGCAGCTCAACTCGGGGCAGTTCTTGCCACGA 257
Query 241 TTGATCATCCGGCGTTAGCAATAACAGGAGTCAACAACCAGCAGGAATTGAGCAGTGTTG 300
|||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 258 TTGACCATCCAGCCTTAGCAATAACAGGAGTTAACAACCAGCAGGAATTGAGCAGTGTTG 317
Query 301 TGCTCGATATCGGGATCATATCCGTTTGGTACTTCCTCGTAATGCCACCAATCATCATGA 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 318 TGCTCGATATCGGGATCATATCCGTTTGGTACTTCCTAGTAATGCCACCAATCATCATGA 377
Query 361 ACTGGCTGAGAGTAAGATGGTACAGAAGGAAGTTCTTCGAGATGTATTTGCAGTTCATGT 420
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 378 ACTGGCTAAGAGTAAGATGGTACAGAAGGAAGTTCTTCGAGATGTATTTACAGTTCATGT 437
Query 421 TCGTCTTCATGTTCTTCCCCGGGCTACTGTTATGGGCACCATTTCTCAACTTCAGAAAGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 438 TCGTCTTCATGTTCTTCCCCGGGCTACTGTTATGGGCACCATTTCTCAACTTCAGGAAGT 497
Query 481 TCCCAAGAGATCC-ATCTATGAAGAATCCTTGGGACAAACCAACAGACCCAGACTCTATT 539
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TCCCAAGAGATCCTAA-TATGAAGAATCCTTGGGACAAACCAACAGACCCAGACTCTATA 556
Query 540 AAGAACAACTACCTCAAATACCCAT-TCGCAACGCCAGAAGATTACGATCTCGATTAACC 598
|||||| |||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 557 AAGAACGTTTACCTCAAATACCCATAT-GCGACGCCAGAAGATTACGATCTCGATTAACA 615
Query 599 GATAGATTCACAAGTTTGT 617
||||||| ||||||| |||
Sbjct 616 GATAGATCCACAAGTCTGT 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29738615024
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5