BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926409
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70782.1 | Symbols: CPuORF28 | conserved peptide upstream op... 728 0.0
AT1G70780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 728 0.0
> AT1G70782.1 | Symbols: CPuORF28 | conserved peptide upstream
open reading frame 28 | chr1:26695166-26696392 REVERSE LENGTH=1136
Length=1136
Score = 728 bits (394), Expect = 0.0
Identities = 434/453 (96%), Gaps = 3/453 (1%)
Strand=Plus/Plus
Query 12 TTTACGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGA 71
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TTT-CGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGG 468
Query 72 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTTTGAG 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 469 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTATGAG 528
Query 132 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAATGTTACGCTCGTGAAGGTCGT 191
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 529 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAAGGTTACGCTCGTGAAGGTCGT 588
Query 192 CTTCCACTTCTTGGATCTGATTTCAATGATTTTCTTCTTTATTGTCCTATGGTTGGACCT 251
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 589 CTTCCTCTTCTTGGATCTGATTTCAATGATTTTCTTCTCTATTGTCCTATGGTTGGACCT 648
Query 252 GAAGCTTTAAGCACATGGAATGCAATTGGATCGCTTGGAGCAAGGAACTTTATGTTGTGT 311
|||||||||||||||||| ||||||||||||| |||||||| |||||||||||| | |||
Sbjct 649 GAAGCTTTAAGCACATGGGATGCAATTGGATCTCTTGGAGCGAGGAACTTTATGCTCTGT 708
Query 312 AGGAAACCAGAAGAGAAGAAAGTTGATGAAAGTAATGGAAGATCTAACTCTACCATTAAT 371
||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 709 AGGAAACCAGAGGAGAAGAAGGTTGAGGAAAGTAATGGAAGATCTGACTCTACCATTAAT 768
Query 372 GGAGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 431
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GGTGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 828
Query 432 CCAAGCCATTAAGATTA-TGTTTCTTCTCTTTT 463
|||||||||||||||| | |||||||||||||
Sbjct 829 TCAAGCCATTAAGATTAAT-TTTCTTCTCTTTT 860
> AT1G70780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male
gametophyte, pollen tube; EXPRESSED DURING: L mature pollen
stage, M germinated pollen stage; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G23150.1); Has
143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695166-26696392
REVERSE LENGTH=1136
Length=1136
Score = 728 bits (394), Expect = 0.0
Identities = 434/453 (96%), Gaps = 3/453 (1%)
Strand=Plus/Plus
Query 12 TTTACGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGA 71
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TTT-CGAAGATGTTGCTCTACAACAAGCAGAAGAAGAACCAAAACGCTAAAGGGAATAGG 468
Query 72 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTTTGAG 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 469 ATTCTCATTAGCGTTACGGTTTTGGGTAGTGCCGGTCCGATCCGGTTTGTTGCTTATGAG 528
Query 132 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAATGTTACGCTCGTGAAGGTCGT 191
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 529 GATGATCTTGTTGCCTCTGTTATCGATACTGCTCTTAAAGGTTACGCTCGTGAAGGTCGT 588
Query 192 CTTCCACTTCTTGGATCTGATTTCAATGATTTTCTTCTTTATTGTCCTATGGTTGGACCT 251
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 589 CTTCCTCTTCTTGGATCTGATTTCAATGATTTTCTTCTCTATTGTCCTATGGTTGGACCT 648
Query 252 GAAGCTTTAAGCACATGGAATGCAATTGGATCGCTTGGAGCAAGGAACTTTATGTTGTGT 311
|||||||||||||||||| ||||||||||||| |||||||| |||||||||||| | |||
Sbjct 649 GAAGCTTTAAGCACATGGGATGCAATTGGATCTCTTGGAGCGAGGAACTTTATGCTCTGT 708
Query 312 AGGAAACCAGAAGAGAAGAAAGTTGATGAAAGTAATGGAAGATCTAACTCTACCATTAAT 371
||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 709 AGGAAACCAGAGGAGAAGAAGGTTGAGGAAAGTAATGGAAGATCTGACTCTACCATTAAT 768
Query 372 GGAGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 431
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GGTGCAAGAAAAGGTGGAAGCTTGAAGGCTTGGATCAACAAATCCTTCAATCTCAAAGTC 828
Query 432 CCAAGCCATTAAGATTA-TGTTTCTTCTCTTTT 463
|||||||||||||||| | |||||||||||||
Sbjct 829 TCAAGCCATTAAGATTAAT-TTTCTTCTCTTTT 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22067541811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5