BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926418
Length=526
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70850.1 | Symbols: MLP34 | MLP-like protein 34 | chr1:26715... 542 2e-153
AT1G70830.1 | Symbols: MLP28 | MLP-like protein 28 | chr1:26709... 538 2e-152
AT1G70890.1 | Symbols: MLP43 | MLP-like protein 43 | chr1:26725... 455 2e-127
AT1G70840.1 | Symbols: MLP31 | MLP-like protein 31 | chr1:26712... 427 4e-119
> AT1G70850.1 | Symbols: MLP34 | MLP-like protein 34 | chr1:26715183-26716829
REVERSE LENGTH=1282
Length=1282
Score = 542 bits (293), Expect = 2e-153
Identities = 423/486 (87%), Gaps = 8/486 (2%)
Strand=Plus/Plus
Query 20 AATGGCAAAAAC-CAAGGCTTCTAGTTTGGTGGGGAAGCTTGAGACAGACGTGGAGATCA 78
|||||||||||| || ||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct 85 AATGGCAAAAACTGAA-GCTCCTAGTTTGGTGGGGAAGCTAGAGACAGAAGTGGAGATCA 143
Query 79 AAGTTTCAGCTGGAAAATTTCATAACATGTTCG-TGGAGAAACCACACCATGTCTCCAAA 137
||| ||| |||||| | |||||| ||||||| | || ||| ||||||||||||||||||
Sbjct 144 AAGCTTCGGCTGGACAGTTTCATCACATGTTTGCCGG-GAAGCCACACCATGTCTCCAAA 202
Query 138 GCAACTCCAGGCCACATTCAGAACTGTGAACTGCATGAAGGCGAATGGGGCAAAGTCGGC 197
|||| ||||||| ||||||||| |||||| ||||| |||||||| ||||||| ||||||
Sbjct 203 GCAAGTCCAGGCAACATTCAGAGCTGTGATCTGCACGAAGGCGACTGGGGCACTGTCGGC 262
Query 198 TCTGTCGTCATCTGGAACTACGTTCATGATGGGGTGGCAAAGGTGGCAAAGGAGAGGATC 257
||| ||||| ||||||| |||||||| ||||||| |||||||||||| |||||||| |||
Sbjct 263 TCTATCGTCTTCTGGAATTACGTTCACGATGGGGAGGCAAAGGTGGCGAAGGAGAGAATC 322
Query 258 GAGGCGTTGGAGCCGGAGAAGAACTTGATCACGTTTAGAGTTCTAGATGGTGATCTGATG 317
|||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 323 GAGGCGGTGGAGCCGGAGAAGAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATG 382
Query 318 AAAGAGTATAAAAGCTTTGTGATCACAATCCAAGTGACCCCTAAGCAAGGAGGGCCAGGG 377
|||||||| || |||||| ||||||| ||||| |||||||||||||| |||||||| ||
Sbjct 383 AAAGAGTACAAGAGCTTTTTGATCACGATCCAGGTGACCCCTAAGCATGGAGGGCCTGGA 442
Query 378 AGTATTGCGCACTGGCACCTTGAGTATGAGAAAATTAGCGAGGAGGTGGCTCA-CCCTGA 436
||||||| ||| ||||||||||||||||||||||| ||||| ||||| ||||| ||| ||
Sbjct 443 AGTATTGTGCATTGGCACCTTGAGTATGAGAAAATCAGCGACGAGGTAGCTCATCCC-GA 501
Query 437 GACTCTTCTCCAATTCTGTGTCGATATGTCCAAAGGGATCGATGAATATCTCTTGA-CCG 495
||||| |||||||||||||| || | ||| ||| |||||| ||| ||||||| | |||
Sbjct 502 AACTCTCCTCCAATTCTGTGTTGAGGTCTCCCAAGAGATCGACGAACATCTCTT-ATCCG 560
Query 496 AAGAAG 501
| ||||
Sbjct 561 AGGAAG 566
> AT1G70830.1 | Symbols: MLP28 | MLP-like protein 28 | chr1:26709947-26711462
REVERSE LENGTH=1331
Length=1331
Score = 538 bits (291), Expect = 2e-152
Identities = 413/472 (88%), Gaps = 8/472 (2%)
Strand=Plus/Plus
Query 34 AGGCTTCTAGTTTGGTGGGGAAGCTTGAGACAGACGTGGAGATCAAAGTTTCAGCTGGA- 92
|||| |||||||||||||||||||| |||||||||||||||||||| | ||| ||| ||
Sbjct 120 AGGCGTCTAGTTTGGTGGGGAAGCTAGAGACAGACGTGGAGATCAAGGCTTCGGCT-GAT 178
Query 93 AAATTTCATAACATGTTCG-TGGAGAAACCACACCATGTCTCCAAAGCAACTCCAGGCCA 151
|| ||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||| |
Sbjct 179 AAGTTTCACCACATGTTCGCTGG-GAAACCACACCATGTCTCCAAAGCAAGTCCAGGCAA 237
Query 152 CATTCA-GAACTGTGAACTGCATGAAGGCGAATGGGGCAAAGTCGGCTCTGTCGTCATCT 210
|||||| | | ||||| ||||| |||||||| ||||||| |||||||||| ||||| |||
Sbjct 238 CATTCAGGGA-TGTGATCTGCACGAAGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCT 296
Query 211 GGAACTACGTTCATGATGGGGTGGCAAAGGTGGCAAAGGAGAGGATCGAGGCGTTGGAGC 270
|||| ||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 297 GGAATTACGTACATGATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGC 356
Query 271 CGGAGAAGAACTTGATCACGTTTAGAGTTCTAGATGGTGATCTGATGAAAGAGTATAAAA 330
| || |||||||||||||||||||| ||| |||| |||||||||||||||||||| || |
Sbjct 357 CAGATAAGAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATGAAAGAGTACAAGA 416
Query 331 GCTT-TGTGATCACAATCCAAGTGACCCCTAAGCAAGGAGGGCCAGGGAGTATTGCGCAC 389
|||| | || |||| ||||| ||||||||||||| ||||| || || ||||||| ||||
Sbjct 417 GCTTCT-TGCTCACCATCCAGGTGACCCCTAAGCCTGGAGGCCCTGGAAGTATTGTGCAC 475
Query 390 TGGCACCTTGAGTATGAGAAAATTAGCGAGGAGGTGGCTCACCCTGAGACTCTTCTCCAA 449
||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 476 TGGCACCTTGAGTATGAGAAAATTAGCGAGGAGGTAGCTCACCCGGAAACTCTCCTCCAG 535
Query 450 TTCTGTGTCGATATGTCCAAAGGGATCGATGAATATCTCTTGACCGAAGAAG 501
||||||||||| | ||||||| |||||| ||| |||||||| |||| ||||
Sbjct 536 TTCTGTGTCGAGGTCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAAG 587
> AT1G70890.1 | Symbols: MLP43 | MLP-like protein 43 | chr1:26725626-26726544
REVERSE LENGTH=818
Length=818
Score = 455 bits (246), Expect = 2e-127
Identities = 397/469 (85%), Gaps = 14/469 (3%)
Strand=Plus/Plus
Query 39 TCTAGTTTGGTGGGGAAGCTTGAGACAGACGTGGAGATCAAAGTTTCAGCTGGAAAA-TT 97
||||||||||||||||| ||||||||||| ||||||||||||| ||| || |||| ||
Sbjct 68 TCTAGTTTGGTGGGGAAACTTGAGACAGAAGTGGAGATCAAAGCTTCGGC-CAAAAAGTT 126
Query 98 TCATAACATGTTCGTGGAGAAACCACACCATGTCTCCAAAGCAACTCCAGGCCACATTCA 157
||| ||||||| |||| ||||||||||||||||||||||||||||| | |||||
Sbjct 127 CCATCACATGTTTACCGAGAGACCACACCATGTCTCCAAAGCAACTCCAGATAAAATTCA 186
Query 158 -GAACTGTGAACTGCATGAAGGCGAATGGGGCAAAGTCGGCTCTGTCGTCATCTGGAACT 216
| | ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||| |
Sbjct 187 TGGA-TGTGAGCTGCACGAAGGCGACTGGGGCAAAGTCGGCTCTATCGTCATCTGGAAAT 245
Query 217 ACGTTCATGATGGGGTGGCAA-AGGTGGCAAAGGAGAGGATCGAGGCGTTGGAGCCGGAG 275
||||||||||||| | || || ||| ||| | | |||||||||| |||| ||||||
Sbjct 246 ACGTTCATGATGGAAAGTTAACAG-TGGGGAAGAATAAGATCGAGGCGGTGGATCCGGAG 304
Query 276 AAGAACTTGATCACGTTTAGAG-TTCTAGATGGTGATCTGATGAAAGAGTATAAAAGCTT 334
|||||| |||||||||| | || || |||| |||||||||||||| ||||| || |||||
Sbjct 305 AAGAACCTGATCACGTTCA-AGGTTTTAGAAGGTGATCTGATGAATGAGTACAAGAGCTT 363
Query 335 TGTGATC-ACAATCCAAGTGACCCCTAAGCAAGGAGG-GCCAGGGAGTATTGCGCACTGG 392
| || ||| |||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 364 CGC-ATTTACACTCCAAGTGACCCCTAAGCAAGG-GGAGTCAGGGAGTATTGCGCACTGG 421
Query 393 CACCTTGAGTATGAGAAAATTAGCGAGGAGGTGGCTCA-CCCTGAGACTCTTCTCCAATT 451
||||| |||||||||||||||||||||||||| ||||| ||| || || |||||||||||
Sbjct 422 CACCTGGAGTATGAGAAAATTAGCGAGGAGGTAGCTCATCCC-GAAACCCTTCTCCAATT 480
Query 452 CTGTGTCGATATGTCCAAAGGGATCGATGAATATCTCTTGACCGAAGAA 500
||||||||| || ||||||| |||||| ||| |||||||| |||| |||
Sbjct 481 CTGTGTCGAGATCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAA 529
> AT1G70840.1 | Symbols: MLP31 | MLP-like protein 31 | chr1:26712982-26714066
REVERSE LENGTH=756
Length=756
Score = 427 bits (231), Expect = 4e-119
Identities = 391/467 (84%), Gaps = 16/467 (3%)
Strand=Plus/Plus
Query 42 AGTTTGGTG-GGGAAGCTTGAGACAGACGTGGAGATCAAAGTTTCAGCTGGAAAATTTCA 100
||||| ||| |||||||| |||||||| | || ||||||| ||||||||| || || ||
Sbjct 107 AGTTT-GTGTGGGAAGCTAGAGACAGATATTGAAATCAAAGCTTCAGCTGGGAAGTTCCA 165
Query 101 TAACATGTTCG-TGGAGAAACCACACCATGTCTCCAAAGCAACTCCAGGCCACATTCAGA 159
| ||||||| | ||| || |||||||||||||||||||||||||||||| | ||||||
Sbjct 166 TCACATGTTTGCTGG-GAGACCACACCATGTCTCCAAAGCAACTCCAGGGAAAATTCAGG 224
Query 160 ACTGTGAACTGCATGAAGGCGAATGGGGCAAAGTCGGCTCTGTCGTCATCTGGAACTACG 219
||||| ||||||||||| || |||||||||||||||||| ||||| ||||||| || |
Sbjct 225 GTTGTGAGCTGCATGAAGGTGACTGGGGCAAAGTCGGCTCTATCGTCTTCTGGAATTATG 284
Query 220 TTCATGATGGGGTGGCAAAGGTGGCAAAGGAGAGGATCGAGGC-GTTGGAGCCGGAGAAG 278
|||||||||| | ||||||||||||||| || ||||||||||| | |||||||||||||
Sbjct 285 TTCATGATGGAGAGGCAAAGGTGGCAAAAGAAAGGATCGAGGCAG-TGGAGCCGGAGAAA 343
Query 279 AACTTGATCACGTTTAGAGTTCTAGATGGTGATCTGA-TGAAAGAGTATAAAAGCTTTGT 337
||| ||||||| ||||| || |||| || || || | | ||||||||||||||||||||
Sbjct 344 AACCTGATCACTTTTAGGGTGATAGAGGGAGA-CTTATTAAAAGAGTATAAAAGCTTTGT 402
Query 338 GATCACAATCCAAGTGACCCCTAAGCA-AGGAGGGCCAGGGAGTATTGCGCACTGGCACC 396
||||||||||||||||||||||||| | |||||| || |||||| | | ||||||||||
Sbjct 403 GATCACAATCCAAGTGACCCCTAAG-AGAGGAGGACCTGGGAGTGTGGTGCACTGGCACG 461
Query 397 TTGAGTATGAGAAAATT-AGCGAGGAGGTGGCTCACCCTGAGACTCTT-CTCCAATTCTG 454
| ||||||||||||||| | ||| | ||||| ||||||||||| ||| || | |||||
Sbjct 462 TCGAGTATGAGAAAATTGA-CGACAAAGTGGCCCACCCTGAGAC-CTTTCTTGATTTCTG 519
Query 455 TGTCGATA-TGTCCAAAGGGATCGATGAATATCTCTTGACCGAAGAA 500
||| || | | ||||||| |||||||||| ||||| ||| ||| |||
Sbjct 520 TGTGGA-AGTCTCCAAAGAGATCGATGAACATCTCCTGAACGAGGAA 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25167307647
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5