BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926419
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70830.1 | Symbols: MLP28 | MLP-like protein 28 | chr1:26709... 300 1e-80
> AT1G70830.1 | Symbols: MLP28 | MLP-like protein 28 | chr1:26709947-26711462
REVERSE LENGTH=1331
Length=1331
Score = 300 bits (162), Expect = 1e-80
Identities = 248/290 (86%), Gaps = 3/290 (1%)
Strand=Plus/Plus
Query 258 CGTATA-GATGGAGAGGCAAAGGTTGCGAAGGAGAGGATCGAGGCGTTGGAGCCGGAGAA 316
|||| | ||||| ||||||||||| ||||||||||||||||||||| ||||||| || ||
Sbjct 304 CGTACATGATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAGATAA 363
Query 317 GAACTTGATCACATTCAGGGTTCTAGAAGGTGATATGACGAAAGAGTATAAGAG-TATCA 375
|||||||||||| || |||||| ||||||||||| ||| ||||||||| ||||| | ||
Sbjct 364 GAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATGAAAGAGTACAAGAGCT-TCT 422
Query 376 CATTCACAATCCAAGTGACCCCTAAGCAAGGAGGGCCAGGGAGTATTGTGCACTGGCACC 435
|||| ||||| ||||||||||||| ||||| || || |||||||||||||||||||
Sbjct 423 TGCTCACCATCCAGGTGACCCCTAAGCCTGGAGGCCCTGGAAGTATTGTGCACTGGCACC 482
Query 436 TTGAGTATGAGAAAATTAGCGAAGAGGTGGCTCACCCTGAGACTCTTCTCCAATTCTGTG 495
|||||||||||||||||||||| ||||| |||||||| || ||||| ||||| |||||||
Sbjct 483 TTGAGTATGAGAAAATTAGCGAGGAGGTAGCTCACCCGGAAACTCTCCTCCAGTTCTGTG 542
Query 496 TTGAAATGTCCAAAGGGATCGATGAATATCTCTTGACCGAAGAAGTGGAG 545
| || | ||||||| |||||| ||| |||||||| |||| |||| ||||
Sbjct 543 TCGAGGTCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAAGAGGAG 592
Score = 244 bits (132), Expect = 5e-64
Identities = 230/278 (83%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 264 GATGGAGAGGCAAAGGTTGCGAAGGAGAGGATCGAGGC-GTTGGAGCCGGAGAAGAACTT 322
||| ||||||||||||| || ||||||||||| ||||| | |||||||| | ||||||||
Sbjct 797 GATAGAGAGGCAAAGGTGGCTAAGGAGAGGATTGAGGCAG-TGGAGCCGAATAAGAACTT 855
Query 323 GATCACATTCAGGGTTCTAGAAGGTGATATGACGAAAGAGTATAAGAG-TATCACATTCA 381
|||||| || |||||| | || |||||| ||| ||||||||| ||||| | || |||
Sbjct 856 GATCACGTTTAGGGTTATCGACGGTGATCTGATGAAAGAGTACAAGAGCT-TCTTGCTCA 914
Query 382 CAATCCAAGTGACCCCTAAGCAAGGAGGGCCAGGGAGTATTGTGCACTGGCACCTTGAGT 441
| ||||| |||||||| |||| ||||| || || |||||||||||||||||||||||||
Sbjct 915 CGATCCAGGTGACCCCGAAGCTTGGAGGCCCTGGAAGTATTGTGCACTGGCACCTTGAGT 974
Query 442 ATGAGAAAATTAGCGAAGAGGTGGCTCACCCTGAGACTCTTCTCCAATTCTGTGTTGAAA 501
|||||||||| ||||| ||||| ||||| || || ||||| |||||||||||||| ||
Sbjct 975 ATGAGAAAATAAGCGAGGAGGTAGCTCATCCGGAAACTCTCCTCCAATTCTGTGTCGAGG 1034
Query 502 TGTCCAAAGGGATCGATGAATATCTCTTGACCGAAGAA 539
| || |||| |||||| ||| |||| ||| |||| |||
Sbjct 1035 TCTCGAAAGAGATCGACGAACATCTTTTGGCCGAGGAA 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5