BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926422
Length=496
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70890.1 | Symbols: MLP43 | MLP-like protein 43 | chr1:26725... 416 9e-116
AT1G70850.1 | Symbols: MLP34 | MLP-like protein 34 | chr1:26715... 407 5e-113
AT1G70830.1 | Symbols: MLP28 | MLP-like protein 28 | chr1:26709... 333 9e-91
AT1G70885.1 | Symbols: | pseudogene, similar to major latex-li... 320 7e-87
AT1G70840.1 | Symbols: MLP31 | MLP-like protein 31 | chr1:26712... 291 6e-78
> AT1G70890.1 | Symbols: MLP43 | MLP-like protein 43 | chr1:26725626-26726544
REVERSE LENGTH=818
Length=818
Score = 416 bits (225), Expect = 9e-116
Identities = 420/508 (83%), Gaps = 38/508 (7%)
Strand=Plus/Plus
Query 1 TTTCTTGAGATAAGC--AAAACTCATGGCAGAAGCGTCTAGTTTAGTGGGTAAGCTTGAG 58
|||||| |||||||| |||| |||||||||||||||||||||| ||||| || ||||||
Sbjct 32 TTTCTTAAGATAAGCAAAAAAATCATGGCAGAAGCGTCTAGTTTGGTGGGGAAACTTGAG 91
Query 59 ACAGAAGTTGAGATCAAAGCTTCGGCTGGAAAGTTCCATCACATGTTTGTCGAGAGACCA 118
|||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 92 ACAGAAGTGGAGATCAAAGCTTCGGCCAAAAAGTTCCATCACATGTTTACCGAGAGACCA 151
Query 119 CACCGTGTCTCCAAAGCAACTCCAAG-CAAAATTCAAGGCTGTGATCTACACGAAGGAGA 177
|||| |||||||||||||||||| || |||||||| || ||||| || |||||||| ||
Sbjct 152 CACCATGTCTCCAAAGCAACTCC-AGATAAAATTCATGGATGTGAGCTGCACGAAGGCGA 210
Query 178 CTGGGGCAAAGTCGGCTCTATCGTCATCTGGAACTACGTT-AT--TGG--------CA-- 224
||||||||||||||||||||||||||||||||| |||||| || ||| ||
Sbjct 211 CTGGGGCAAAGTCGGCTCTATCGTCATCTGGAAATACGTTCATGATGGAAAGTTAACAGT 270
Query 225 ----A-GA-T-----CGAGGCAGTAGAGCCGGAGAAGAACTTGATCACGTTCAAGGTTAT 273
| || | |||||| || || |||||||||||| ||||||||||||||||| |
Sbjct 271 GGGGAAGAATAAGATCGAGGCGGTGGATCCGGAGAAGAACCTGATCACGTTCAAGGTTTT 330
Query 274 AGAAGGTGATCTGATGAAAGAGTACACGAGCTTTGTGATC-ACAATCCAAGTGACCCCTA 332
|||||||||||||||||| ||||||| |||||| | || ||| |||||||||||||||
Sbjct 331 AGAAGGTGATCTGATGAATGAGTACAAGAGCTTCGC-ATTTACACTCCAAGTGACCCCTA 389
Query 333 AGCATAAGGG-GTCAGGAAGTGTGGTGCACTGGCACTTCGAGTATGAGAAAATGAACGAG 391
|||| | ||| |||||| ||| | | |||||||||| | |||||||||||||| | ||||
Sbjct 390 AGCA-AGGGGAGTCAGGGAGTATTGCGCACTGGCACCTGGAGTATGAGAAAATTAGCGAG 448
Query 392 GAGGTAGATCATCCTGAGAATC-TCCTCCAGTT-TGCCG-CTGAAATGTCCAAAGAGATC 448
||||||| |||||| || || | | ||||| || || | | || || ||||||||||||
Sbjct 449 GAGGTAGCTCATCCCGA-AACCCTTCTCCAATTCTGT-GTC-GAGATCTCCAAAGAGATC 505
Query 449 GATGAACATCTCTTGACCGAAGAATAGA 476
|| |||||||||||| |||| |||||||
Sbjct 506 GACGAACATCTCTTGGCCGAGGAATAGA 533
> AT1G70850.1 | Symbols: MLP34 | MLP-like protein 34 | chr1:26715183-26716829
REVERSE LENGTH=1282
Length=1282
Score = 407 bits (220), Expect = 5e-113
Identities = 384/457 (84%), Gaps = 36/457 (8%)
Strand=Plus/Plus
Query 53 CTTGAGACAGAAGTTGAGATCAAAGCTTCGGCTGGA-AAGTTCCATCACATGTTTGTCGA 111
||||||||||| || |||||||||||||| ||| || ||||||||||||||||| | ||
Sbjct 590 CTTGAGACAGAGGTGGAGATCAAAGCTTCCGCT-GAGAAGTTCCATCACATGTTCGCCGG 648
Query 112 GAGACCACACCGTGTCTCCAAAGCAACTCCAAGCAAA-ATTCAAG-GCTGTGATCTACAC 169
|| |||||||| |||||| ||||||||||| || ||| |||| || |||||||||| |||
Sbjct 649 GAAACCACACCATGTCTCTAAAGCAACTCC-AGGAAACATTC-AGAGCTGTGATCTGCAC 706
Query 170 GAAGGAGACTGGGGCAAAGTCGGCTCTATCGTCATCTGGAACTACG-T--T-AT------ 219
||||| |||||||||| |||||||||||||||| |||||||||||| | | ||
Sbjct 707 GAAGGTGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGAACTACGTTCATGATGGGGAG 766
Query 220 -------TGGC-----A-A-GATCGAGGCAGTAGAGCCGGAGAAGAACTTGATCACGTTC 265
|||| | | ||| ||||| || || || ||||| |||||||||||||||
Sbjct 767 GCAAAGGTGGCAAAGGAGAGGATTGAGGCGGTGGATCCAGAGAAAAACTTGATCACGTTC 826
Query 266 AAGGTTATAGAAGGTGATCTGATGAAAGAGTACACGAGCTTTGTGATCACAATCCAAGTG 325
| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct 827 AGGGTTATAGAAGGTGATCTGATGAAAGAGTACAAGAGCTTCGTAATCACAATCCAAGTG 886
Query 326 ACCCCTAAGCATAAGG-GGT-CAGGAAGTGTGGTGCACTGGCACTTCGAGTATGAGAAAA 383
|| ||||||||| || ||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct 887 ACTCCTAAGCAT--GGAGGTTCAGGGAGTGTGGTGCATTGGCACTTCGAGTATGAGAAAA 944
Query 384 TGAACGAGGAGGTAGATCATCCTGAGAATCTCCTCCAGTTTGCCG-CTGAAATGTCCAAA 442
| ||||||||||| | ||||||||||| ||||||||||||||||| | ||| | ||||||
Sbjct 945 TAAACGAGGAGGTGGCTCATCCTGAGACTCTCCTCCAGTTTGCCGTC-GAAGTCTCCAAA 1003
Query 443 GAGATCGATGAACATCTCTTGACCGAAGAATAGAGGA 479
|| ||||| |||||||||||| |||| ||||||||||
Sbjct 1004 GAAATCGACGAACATCTCTTGGCCGAGGAATAGAGGA 1040
Score = 366 bits (198), Expect = 9e-101
Identities = 395/483 (82%), Gaps = 41/483 (8%)
Strand=Plus/Plus
Query 29 GAAGCGT-CTAGTTTAGTGGGTAAGCTTGAGACAGAAGTTGAGATCAAAGCTTCGGCTGG 87
||||| | ||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 98 GAAGC-TCCTAGTTTGGTGGGGAAGCTAGAGACAGAAGTGGAGATCAAAGCTTCGGCTGG 156
Query 88 AAAGTTCCATCACATGTTTGTCGAG-AGACCACACCGTGTCTCCAAAGCAACTCCAAGCA 146
| |||| ||||||||||||| || | || ||||||| |||||||||||||| |||| |||
Sbjct 157 ACAGTTTCATCACATGTTTGCCGGGAAG-CCACACCATGTCTCCAAAGCAAGTCCAGGCA 215
Query 147 AAATTCAAG-GCTGTGATCTACACGAAGGAGACTGGGGCAAAGTCGGCTCTATCGTCATC 205
| |||| || |||||||||| |||||||| |||||||||| ||||||||||||||| ||
Sbjct 216 ACATTC-AGAGCTGTGATCTGCACGAAGGCGACTGGGGCACTGTCGGCTCTATCGTCTTC 274
Query 206 TGGAACTACGTT----AT-------------TGGC-----A-AG-ATCGAGGCAGTAGAG 241
||||| |||||| || |||| | || |||||||| || |||
Sbjct 275 TGGAATTACGTTCACGATGGGGAGGCAAAGGTGGCGAAGGAGAGAATCGAGGCGGTGGAG 334
Query 242 CCGGAGAAGAACTTGATCACGTTCAAGGTTATAGAAGGTGATCTGATGAAAGAGTACACG 301
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 335 CCGGAGAAGAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATGAAAGAGTACAAG 394
Query 302 AGCTTTGTGATCACAATCCAAGTGACCCCTAAGCATA-AGGGGTCAGGAAGTGTGGTGCA 360
|||||| ||||||| ||||| ||||||||||||||| |||| | |||||| | |||||
Sbjct 395 AGCTTTTTGATCACGATCCAGGTGACCCCTAAGCATGGAGGGC-CTGGAAGTATTGTGCA 453
Query 361 CTGGCAC-TTCGAGTATGAGAAAATGAACGAGGAGGTAGATCATCCTGAGAA-TCTCCTC 418
|||||| || |||||||||||||| | ||| ||||||| |||||| || || |||||||
Sbjct 454 TTGGCACCTT-GAGTATGAGAAAATCAGCGACGAGGTAGCTCATCCCGA-AACTCTCCTC 511
Query 419 CAGTT-TGCCGCTGAAATGTCCAAAGAGATCGATGAACATCTCTTGA-CCGAAGAATA-G 475
|| || || | ||| | ||| |||||||||| ||||||||||| | |||| ||| | |
Sbjct 512 CAATTCTGT-GTTGAGGTCTCCCAAGAGATCGACGAACATCTCTT-ATCCGAGGAAGAAG 569
Query 476 AGG 478
|||
Sbjct 570 AGG 572
> AT1G70830.1 | Symbols: MLP28 | MLP-like protein 28 | chr1:26709947-26711462
REVERSE LENGTH=1331
Length=1331
Score = 333 bits (180), Expect = 9e-91
Identities = 388/481 (81%), Gaps = 43/481 (9%)
Strand=Plus/Plus
Query 32 GCGTCTAGTTTAGTGGGTAAGCTTGAGACAGAAGTTGAGATCAAAGCTTCGGCTGGA-AA 90
||||||||||| ||||| ||||| |||||||| || |||||||| ||||||||| || ||
Sbjct 122 GCGTCTAGTTTGGTGGGGAAGCTAGAGACAGACGTGGAGATCAAGGCTTCGGCT-GATAA 180
Query 91 GTTCCATCACATGTTTGTC-GAGAGACCACACCGTGTCTCCAAAGCAACTCCAAGCAAAA 149
||| || |||||||| | | | || |||||||| |||||||||||||| |||| |||| |
Sbjct 181 GTTTCACCACATGTTCG-CTGGGAAACCACACCATGTCTCCAAAGCAAGTCCAGGCAACA 239
Query 150 TTCAAGGCTGTGATCTACACGAAGGAGACTGGGGCAAAGTCGGCTCTATCGTCATCTGGA 209
|||| || |||||||| |||||||| |||||||||| |||||||||||||||| ||||||
Sbjct 240 TTCAGGGATGTGATCTGCACGAAGGCGACTGGGGCACAGTCGGCTCTATCGTCTTCTGGA 299
Query 210 ACTACGT---T-AT-------------TGGC-----A-A-GATCGAGGCAGTAGAGCCGG 245
| ||||| | || |||| | | ||||||||| || ||||| |
Sbjct 300 ATTACGTACATGATGGGGAGGCAAAGGTGGCGAAGGAGAGGATCGAGGCGGTGGAGCCAG 359
Query 246 AGAAGAACTTGATCACGTTCAAGGTTATAGAAGGTGATCTGATGAAAGAGTACACGAGCT 305
| ||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 360 ATAAGAACTTGATCACGTTTAGGGTTATAGAAGGTGATCTGATGAAAGAGTACAAGAGCT 419
Query 306 T-TGTGATCACAATCCAAGTGACCCCTAAGCATAAGG-GGTCA-GGAAGTGTGGTGCACT 362
| | || |||| ||||| ||||||||||||| | || || | |||||| | |||||||
Sbjct 420 TCT-TGCTCACCATCCAGGTGACCCCTAAGCCT--GGAGGCCCTGGAAGTATTGTGCACT 476
Query 363 GGCAC-TTCGAGTATGAGAAAATGAACGAGGAGGTAGATCATCCTGAGAA-TCTCCTCCA 420
||||| || |||||||||||||| | ||||||||||| ||| || || || |||||||||
Sbjct 477 GGCACCTT-GAGTATGAGAAAATTAGCGAGGAGGTAGCTCACCCGGA-AACTCTCCTCCA 534
Query 421 GTT-TGCCG-CTGAAATGTCCAAAGAGATCGATGAACATCTCTTGACCGAAGAATAG-AG 477
||| || | | || | |||||||||||||| |||||||||||| |||| ||| || ||
Sbjct 535 GTTCTGT-GTC-GAGGTCTCCAAAGAGATCGACGAACATCTCTTGGCCGAGGAAGAGGAG 592
Query 478 G 478
|
Sbjct 593 G 593
> AT1G70885.1 | Symbols: | pseudogene, similar to major latex-like
protein, blastp match of 64% identity and 7.2e-16 P-value
to GP|13172242|gb|AAK14060.1|AF239177_1|AF239177 major latex-like
protein {Prunus persica} | chr1:26724925-26725233 REVERSE
LENGTH=309
Length=309
Score = 320 bits (173), Expect = 7e-87
Identities = 210/228 (92%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 1 TTTCTTGAGAT-AAGCAAAACTCATGGCAGAAGCGTC-TAGTTTAGTGGGTAAGCTTGAG 58
||||||||||| |||||||| ||||||| |||||||| |||||||||||| |||||||||
Sbjct 72 TTTCTTGAGATAAAGCAAAAATCATGGCCGAAGCGTCTTAGTTTAGTGGGGAAGCTTGAG 131
Query 59 ACAGAAGTTGAGATCAAAGCTTCGGCTGGAAAGTTCCATCACATGTTTGTCGAGAGACCA 118
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 132 ACAGAAGTTGAGATCAAAGCTTCGGCTGGAAAGTTCCATCACATGTTCGTCGAGAGACCA 191
Query 119 CACCGTGTCTCCAAAGCAACTCCAAGCAAAATTCAAGGCTGTGATCTACACGAAGGAGAC 178
|||| ||| || ||||||||| || |||||||||| || ||||||||||||||||| |||
Sbjct 192 CACCATGTATCAAAAGCAACTTCAGGCAAAATTCAGGGATGTGATCTACACGAAGGCGAC 251
Query 179 TGGGGCAAAGTCGGCTCTATCGTCATCTGGAACTACGTTATTGGCAAG 226
| ||||||| |||||||||| ||||||||||||||| |||||||||||
Sbjct 252 TAGGGCAAACTCGGCTCTATTGTCATCTGGAACTACATTATTGGCAAG 299
> AT1G70840.1 | Symbols: MLP31 | MLP-like protein 31 | chr1:26712982-26714066
REVERSE LENGTH=756
Length=756
Score = 291 bits (157), Expect = 6e-78
Identities = 379/479 (79%), Gaps = 44/479 (9%)
Strand=Plus/Plus
Query 33 CGTCTAGTTTAGTG-GGTAAGCTTGAGACAGA-AGTTGAGATCAAAGCTTCGGCTGGAAA 90
|||| ||||| ||| || ||||| |||||||| | |||| ||||||||||| ||||| ||
Sbjct 102 CGTCAAGTTT-GTGTGGGAAGCTAGAGACAGATA-TTGAAATCAAAGCTTCAGCTGGGAA 159
Query 91 GTTCCATCACATGTTTGTC-GAGAGACCACACCGTGTCTCCAAAGCAACTCCAAGCAAAA 149
||||||||||||||||| | | ||||||||||| ||||||||||||||||||| | ||||
Sbjct 160 GTTCCATCACATGTTTG-CTGGGAGACCACACCATGTCTCCAAAGCAACTCCAGGGAAAA 218
Query 150 TTCAAGGCTGTGATCTACACGAAGGAGACTGGGGCAAAGTCGGCTCTATCGTCATCTGGA 209
|||| || ||||| || || ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 219 TTCAGGGTTGTGAGCTGCATGAAGGTGACTGGGGCAAAGTCGGCTCTATCGTCTTCTGGA 278
Query 210 ACTACG-T--T-AT-------------TGGC------AA-GATCGAGGCAGTAGAGCCGG 245
| || | | | || |||| || |||||||||||| |||||||
Sbjct 279 ATTATGTTCATGATGGAGAGGCAAAGGTGGCAAAAGAAAGGATCGAGGCAGTGGAGCCGG 338
Query 246 AGAAGAACTTGATCACGTTCAAGGTTATAGAAGGTGATCTGA-TGAAAGAGTACACGAGC 304
|||| ||| ||||||| || | ||| ||||| || || || | | |||||||| | |||
Sbjct 339 AGAAAAACCTGATCACTTTTAGGGTGATAGAGGGAGA-CTTATTAAAAGAGTATAAAAGC 397
Query 305 TTTGTGATCACAATCCAAGTGACCCCTAAGCATAAGG-GGTCA-GGAAGTGTGGTGCACT 362
|||||||||||||||||||||||||||||| | | || || | || |||||||||||||
Sbjct 398 TTTGTGATCACAATCCAAGTGACCCCTAAG-AGA-GGAGGACCTGGGAGTGTGGTGCACT 455
Query 363 GGCACTTCGAGTATGAGAAAAT-GAACGAGGAGGTAGATCATCCTGAGAA-TCTCCTCCA 420
||||| |||||||||||||||| || ||| | || | || ||||||| | || | |
Sbjct 456 GGCACGTCGAGTATGAGAAAATTGA-CGACAAAGTGGCCCACCCTGAGACCTTTCTTG-A 513
Query 421 GTT-TGCCGCTGAAA-TGTCCAAAGAGATCGATGAACATCTCTTGACCGAAGAATAGAG 477
|| || | || || | |||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 514 TTTCTGT-G-TGGAAGTCTCCAAAGAGATCGATGAACATCTCCTGAACGAGGAATAGAG 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23660283237
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5