BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926427

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70910.1 | Symbols: DEP | RING/U-box superfamily protein | c...   246    1e-64


> AT1G70910.1 | Symbols: DEP | RING/U-box superfamily protein | 
chr1:26734155-26734640 FORWARD LENGTH=486
Length=486

 Score =  246 bits (133),  Expect = 1e-64
 Identities = 370/479 (77%), Gaps = 37/479 (8%)
 Strand=Plus/Plus

Query  26   AGAGGTGGTGTGTACTGGTGCAA-TCGTTACACGCAACTCTACATCGAACACAGTAGAGA  84
            |||| | ||||||| ||  |||| | ||||| ||||| |||||||| ||||| || ||||
Sbjct  15   AGAGCTCGTGTGTATTGAAGCAAGT-GTTACGCGCAAATCTACATCAAACACGGTGGAGA  73

Query  85   TCAAAGTATCGCGTCTAAACAATCTCACTTCAGGAACAAACGATTCTCCTCCGTTCCCAA  144
            ||| || |||||||| ||||||  | |||| |||| ||| |||||||||| ||||||| |
Sbjct  74   TCAGAGAATCGCGTCGAAACAAGGTTACTTTAGGATCAAGCGATTCTCCTGCGTTCCCGA  133

Query  145  CCCCTTACCTCCTTTTGGACAACATCGTTAGCTTTGATGAAC-ACGACATGTATGTTCTC  203
            ||||| ||||| ||||| | |||||||| ||||||||||||| | | |||||||  ||| 
Sbjct  134  CCCCTCACCTCTTTTTGAAAAACATCGTGAGCTTTGATGAACAAAG-CATGTATAATCTT  192

Query  204  CTGTATCCAAGGCTCCAAGATCCCAACTTATGCCGTATTCTCTCCTCCGAGATTGCTTCC  263
            || |||||||||||||||||||||||||||||| |||||||||||| | |||| |||| |
Sbjct  193  CTCTATCCAAGGCTCCAAGATCCCAACTTATGCAGTATTCTCTCCTTCAAGATCGCTTTC  252

Query  264  AAAGCCAAGCGAGTTCAAGG-C--T----C--CT--T-TGACGTCACAATAGAACA-ATA  310
             ||||||||||||||| ||| |  |    |  ||  | |||||||||| || | |  | |
Sbjct  253  GAAGCCAAGCGAGTTCCAGGGCCGTTGTACATCTCCTATGACGTCACATTA-ACCCCACA  311

Query  311  TATAATCGAGGAA---GA-A---A--CATGCGCTATTTGCTTGGAGGATGATGATGATGA  361
             ||| ||||||||   || |   |  |||||| | ||||||||  ||| ||  |  | | 
Sbjct  312  AATATTCGAGGAACCAGACATGGAAACATGCGGTCTTTGCTTGTTGGAGGA--AC-A-GC  367

Query  362  ATACTTAACCGAAATGCCAAACTGTACGCATGAGTTTCATAGTGAATGTATC-ACTGCGT  420
            |  ||||  ||| |||||||| ||| |||||| ||||||| |||| |||||| | |  ||
Sbjct  368  A--CTTATTCGACATGCCAAATTGTGCGCATGTGTTTCATGGTGATTGTATCGA-TAAGT  424

Query  421  GGTTATGTATGAGTAATAGTTGCCCTAC-CTGCCGTGCTCCAATTCTGGAtgactacga  478
            ||||| |||  ||||||| ||||||| | |||  ||| |  |||| |||||||| ||||
Sbjct  425  GGTTAAGTACAAGTAATAATTGCCCT-CTCTGTGGTGTTGAAATTATGGATGACGACGA  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27176673527


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5