BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926432

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70949.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   353    4e-97


> AT1G70949.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 30201 Blast hits to 17322 proteins in 780 
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr1:26752401-26752664 REVERSE LENGTH=264
Length=264

 Score =  353 bits (191),  Expect = 4e-97
 Identities = 232/250 (93%), Gaps = 9/250 (4%)
 Strand=Plus/Plus

Query  21   ATGTCATGTGc-ttttttcttcttctttttttgtcttcttcttGTCAGAGGATGCTCACG  79
            ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  1    ATGTCATGTGCTTTTTTTCTTCTTCTTTTTTTGTCTTTTTCTTGTCAGAGGATGCTCACG  60

Query  80   TTCTCCGTTATCA--CCTCCCGTTTATTTA-GGGTTTATCAACGGTCCAGATTCTTCGCT  136
            |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||| || 
Sbjct  61   TTCTCCGTTATCAGTCCTCCCGTTTATTTAGGGGTTTATCAACGGTCCAGATTCTTTGC-  119

Query  137  TATAAAATTTAGACGGCGGTTTACTGTTTTAACGGCAGATGTGGATCGAAACTCTGAAAG  196
            |||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  120  TATAAAGTTTAGACGGCGGTTTACTGTTTTAACGGCAGATGTGGATCGATACCCTGAAAG  179

Query  197  TGGCAGGGT-ATTGCCACGTCATAATAATGGACTAAGGCCCACTCATTGAGTATTATAAA  255
            ||||||||| || |||||||||||||||||||||||||| ||||||   |||||||||| 
Sbjct  180  TGGCAGGGTTAT-GCCACGTCATAATAATGGACTAAGGCTCACTCAAC-AGTATTATAA-  236

Query  256  TAAGGTCCAA  265
            |||| |||||
Sbjct  237  TAAGATCCAA  246



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12114527509


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5