BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926433
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70950.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 2080 0.0
> AT1G70950.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr1:26752689-26755359 FORWARD LENGTH=1644
Length=1644
Score = 2080 bits (1126), Expect = 0.0
Identities = 1370/1484 (92%), Gaps = 32/1484 (2%)
Strand=Plus/Plus
Query 1 TTA-TTTCCTTGAGATCAATTATGGCAGGTGAGATTCAAGAACCGTTTAGTCTTAGTTTT 59
||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 70 TTATTTTCCTTGAGATCAATTATGGCAGGAGAGATTCAGGACCCGTTTAGTCTTAGTTTT 129
Query 60 CAGGGGAATTCTATCCACTCTGGATCTATATCGTTCGGAAGATTCGAGAAAGAGGGTTTA 119
|||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 130 CAGGGGAACTCTATCCACTCTGGATCGATATCCTTTGGAAGATTCGAGAAAGAGGGTTTA 189
Query 120 TCATGGGAGAAGAGATCATCTTTTTCTCACAATAGGTATCTTGAAGAAGTTGACAAGTGT 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TCATGGGAGAAGAGGTCATCTTTTTCTCACAATAGGTATCTTGAAGAAGTTGACAAGTGT 249
Query 180 TCTAAACCTGGTTCTGTTACTGAGATGAAAGCACATTTTGAGGCTCATTTCAAGAAGAAA 239
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 250 TCTAAACCTGGCTCTGTTACTGAGATGAAAGCACATTTTGAAGCTCATTTCAAGAAGAAA 309
Query 240 GGAATCCGATTTCCGGCTTCTCTTGAATCTCAAACTTGGGGAGTTCATCAAACAAGTGGT 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 310 GGAATCCGATTTCCAGCTTCTCTTGAATCTCAAACTTGGGGAGTTCATCAAACAAGTAAT 369
Query 300 GAACCGGATGATGAAGCTGTCCATGCAACTGAAAGTTTCAAGGATTATCGATCTGATGGG 359
|| || |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 370 GAGCCTGATGATGAAGCTGTTCATGCTACTGAAAGTTTCGAGGATTATCGATCTGATGGG 429
Query 360 AGTTTCTCGGAGAATACTAGTCGATCAAATAGTGTTTGTAACTATAGCCTTGAACAAGAG 419
|||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||
Sbjct 430 AGTTTCTCGGAGGATACTAGTCAATCGAATAGTGTTTGTAACTATAGCCATGAACAAGAG 489
Query 420 AAATGTGGTCAAGGAAAGAGTCAATGTGAGTATGATGAGGAAAGTGATAAATGTGTTTGC 479
||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| ||
Sbjct 490 AAATGTGGTCAAGGAAAGAGTCAATGTGAGTTTGATGAGGAAAGTGATCATTGTGTTAGC 549
Query 480 TATGATGAGATTCTAGTGAATTCTGATGAAGTGATTGAGCTTGATGAAGAAGAAGGTGGT 539
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 550 TATGATGAGATTCTAGTGAATTCTGATGAAGTTATTGAGCTTGATGAAGAAGAAGGCGGT 609
Query 540 GGTGACCACGGGACGGTTGCTGTTCCTGTTGAGTGTGAGGATCTTGGACCTCCTGAGATG 599
||||||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||
Sbjct 610 GGTGACCACGGGAGGGTTGCTGATCTTGTTGAGTGTGAGAATCTTGGACCTCCTGAGATG 669
Query 600 CCACAAGAGATTGAGATTCAAGATTCTGTTTTAGTTGAAGAGACCGGATCGAAACTCGAT 659
||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 670 CCACAAGAGATTGTGATTCAAGATTCTGCTTTAGTTGAAGAGGCGGGATCGAAACTCGAT 729
Query 660 GAACATG-TTCCAAAAAAGCCATAC-GATGCTACGGAAACACCCTCCTCCTCTGTATCTG 717
||||||| || |||||||||||| | || ||| |||||||||||||| | | |||
Sbjct 730 GAACATGCTT-CAAAAAAGCCAT-CTAATTCTATGGAAACACCCTCCT-C-C----TCT- 780
Query 718 GATCGAAGTCACGGGAGAAGGTGAAACCTAGTATTCCTCATGATGTGCGTGTGATTAAAG 777
| | || || |||||||||| ||||||| ||||||||||||||| |||||
Sbjct 781 G-T--AA---AC--------GTGAAACCTATTATTCCTAATGATGTGCGTGTGACTAAAG 826
Query 778 CTTCTACAAAGAGAGATAATGTAACACCAAAAGCTGCTTCAAGGAGGACAAATGGTTCTT 837
||||||||||| || || ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 827 CTTCTACAAAGGGACATGATGTAACGCCAAAAGCTGCTTCAAGGAGGACAAAGGGTTCTT 886
Query 838 CTTTAAGTTCTAATTATAAAACTAATGTAGATGGCAAGAGCCAAAAGGAATTAAGACCGA 897
||||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||
Sbjct 887 CTTTAAGTTCTAATTCTAAAACCAATGTAGATGCCAAGAGCCAAAAGGAACTAAGACCGA 946
Query 898 AGAAAACCATTGAGTCTCAACCTAAAACATCGAAGAAAATCGAGACTCGAACTCCTATTG 957
|||||||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||
Sbjct 947 AGAAAACCATTGAGTCTCAACCTAAATCATCGAACAAAACCGAGACTCGACCTCCTATTG 1006
Query 958 CTACAAACAGGTGCAAGAGTAGTACCACTTGTGCTAAGCTGGAGATGAGTACAGGTTCTA 1017
|||| ||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 1007 CTACGAACAGGTGCAAGACTAGTACCACTTCTTCTAAGCTGGAGATGAGTACAGGTTCTA 1066
Query 1018 CTAGTTTCCGTTTCAAATGTAGCGAACGAGCTGAGAAGAGAAAAGAGTTCTATATGAAAC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CTAGTTTCCGTTTCAAATGTAGCGAACGAGCTGAGAAGAGAAAAGAGTTCTATATGAAAC 1126
Query 1078 TGGAGGAGAAAATACATGCTAAGAAAACAGAAACAAACCAAGTTCAGGCCAAAACACAGC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TGGAGGAGAAAATACATGCTAAGAAAACAGAAACAAACCAAGTTCAGGCCAAAACACAGC 1186
Query 1138 AAAAGGTAGAAGCTGAGATTAAACAGTTCAGGAAAAGCCTCAACTTTAAGGCAACACCAA 1197
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1187 AAAAGGCAGAAGCTGAGATTAAACAGTTCAGGAAAAGCCTCAATTTTAAGGCAACACCAA 1246
Query 1198 TGCCTTCATTCTACAACACCGGTACTAGACCGGCGTCTCATCACAAGACCGAGCCCAG-T 1256
|||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| | |
Sbjct 1247 TGCCTTCATTCTACAACATCGGTACTAGACCGGTGTCTCATAACAAGACCGAGCC-ATCT 1305
Query 1257 AAAGTAGCACCATCAAGATCACAACCCGCGACCTCAGCCTCAATTACAAACCGGGCAGTC 1316
|||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||| |||
Sbjct 1306 AAAGTAGCACAATCAAGATCACGACCAGCGACCTCAGCCTCAATTACAAACAGGGCGGTC 1365
Query 1317 ACAAGAGTTTCTTACAAACACGGTTTCGAAGAAGCTAAAATGGTAAAGGTAATGGTCAGT 1376
|| ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1366 ACCAGAGTTTCTTATAAACACGGTTTTGAAGAAGCTGAAATGGTAAAGGTAATGGTCAGT 1425
Query 1377 AATAGAAAACAAAGTGCGGCTAAAGATTCGGATTTGCAAAAGGGTAATCTTATGGCTGTA 1436
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1426 AATAGAAAACAGAGTGCGGCTAAAGATTCAGATTTGCAAAAGGGTAATCTTATGGCGGTT 1485
Query 1437 GAAATAAAACAAAAGGTTAGCTAGTGCTCGAAGAAGCGGAAACT 1480
||||| |||||| || || | |||||||||||||| ||||||
Sbjct 1486 GAAATGAAACAACAGATT-G---GTGCTCGAAGAAGCAGAAACT 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72991592430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5