BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926434
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71320.1 | Symbols: | F-box family protein | chr1:26882485-... 688 0.0
> AT1G71320.1 | Symbols: | F-box family protein | chr1:26882485-26883818
FORWARD LENGTH=1179
Length=1179
Score = 688 bits (372), Expect = 0.0
Identities = 555/640 (87%), Gaps = 26/640 (4%)
Strand=Plus/Plus
Query 12 GTGAAGAGAATGCCGTTTTTTGCTGGATTTGGCAAAGATATTGCTACAAAATCATATAAG 71
|||||||||||||||| | |||||||||||||||||||||||| || |||||| ||||||
Sbjct 547 GTGAAGAGAATGCCGTCTCTTGCTGGATTTGGCAAAGATATTGTTAAAAAATCTTATAAG 606
Query 72 GTGATTTTGATATATTCAAGATTTGGAAAT-GTTGATGATTG-TTTCAAGGCCAAGGTCC 129
||| ||||||||||| |||||| | ||||| |||| | || ||||||||||||||||
Sbjct 607 GTGGTTTTGATATATACAAGATAT-GAAATACATGATCA-TGAGTTCAAGGCCAAGGTCC 664
Query 130 TATCCCTTGATAATGGTGAGCAAAGAGGCACA-AGTTTATATTG-TTTAAATAACCGTA- 186
||||||||||||||||||||||||||| | | |||| || || || || | |||
Sbjct 665 TATCCCTTGATAATGGTGAGCAAAGAGACGTAGGGTTT-TA-TGACATACATCATTGTAT 722
Query 187 CATTCTGCGAAGAGCAAACATCAGTCTACGCAAACAGATCCCTCTTTTGGTTGACATT-A 245
| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 723 C-TTCTGCGATGAGCAAACATCAGTCTACGCCAACGGATCCCTCTTTTGGTTGACATTAA 781
Query 246 TGTGA-C-TA-TCAACGAACA-CTTGCAAAGCTACTAGCTATCGATCTTCACATC-GAAG 300
| | | || || | |||| ||| | ||||| |||||||||||||||||| | ||||
Sbjct 782 AG-AAGCTTAGTC-A--AACATCTTAC-CAGCTATTAGCTATCGATCTTCACA-CTGAAG 835
Query 301 AATTTCGATGGATATTATTACCAGAGTGTTACGTCAGCTATGATTCTAGTATAGAAATGT 360
||||||||||||||||||||||||||||| || || |||| | ||| |||||||||||
Sbjct 836 AATTTCGATGGATATTATTACCAGAGTGTGACACCAAATATGCTACTAATATAGAAATGT 895
Query 361 GGAATCTGAATGACCGTTTGTGCGTATCGGATGTGCTA-AAATGTTCAAATTTGGTCGTT 419
||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 896 GGAATCTGAATGAACGTTTGTGCCTATCGGATGTGCTAGAAA-GTTCAAATTTGGTCGTT 954
Query 420 TGGAGTTTACAACAAGAATATCCTACCGTGAAATGGGAGAAAATATATTCTATTGATATT 479
||||||||||| |||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 955 TGGAGTTTACACCAAGAATATCCTACCGAAAAATGGGAGAAAATATATTCTATTAAGATT 1014
Query 480 G-GGTTTATAAGAACCAACCAGTTACATGAAAAGTTTTGGATGCTTGGTCTAGCGGCTGC 538
| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GACG-TTATAAGAACCAACCAATTACATGAAAAGTTTTGGATGCTTGGTCTAGCGGCTGC 1073
Query 539 TTATTTTCCAAGTATTATAAATCATCGAGATCAAGTTTCTTTTTTCAGACAAAGAACGAT 598
|||||| ||| ||| | ||||| || |||||||||||||||||| ||||||||||||||
Sbjct 1074 CTATTTTTCAAATATCAGAAATCGTCAAGATCAAGTTTCTTTTTTTAGACAAAGAACGAT 1133
Query 599 TTCATATTCGCCAACAATGATTTCTCCTTCCAGTTTGATG 638
||| |||| ||||||||||||||||||||| | |||||||
Sbjct 1134 TTCGTATTTGCCAACAATGATTTCTCCTTCAAATTTGATG 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099619933
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5