BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926435
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70970.1 | Symbols: | F-box and associated interaction doma... 335 7e-91
AT1G70390.1 | Symbols: | F-box and associated interaction doma... 167 3e-40
> AT1G70970.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:26759834-26761042 FORWARD LENGTH=1209
Length=1209
Score = 335 bits (181), Expect = 7e-91
Identities = 826/1122 (74%), Gaps = 105/1122 (9%)
Strand=Plus/Plus
Query 22 ATGGTGAATTCAAATTCCCAAAC-C--CCTCCTGAAGATCTAGAAAAGAAGATTCTTTTA 78
|||| |||||||| |||| |||| | | | ||||||| || ||| | |||| | | |
Sbjct 1 ATGGAGAATTCAAGTTCCGAAACACTTCATGTTGAAGATTTACAAACGGAGATAATGTCA 60
Query 79 CGGTTGCCTCTGAAATCCTTGGTGAAACTCATCCA-AGTCTCAAAGAAATGGGCATCTAT 137
|| ||||||||||| |||| ||| | || | || |||||||||||||||||||||||
Sbjct 61 TGGCTGCCTCTGAAAAGCTTGTTGAGATTCGT-CATCGTCTCAAAGAAATGGGCATCTAT 119
Query 138 TATCCGTGGGGAAGAATTCAGA-CGTGAGTACTTGC-TCCGATCAATGACAAGACCTCGA 195
||||||||| ||| |||||| | | | ||||||| || |||| |||||||| |||||
Sbjct 120 TATCCGTGGAGAACAATTCAAAGC-TCTTTACTTGCGTC-GATCGATGACAAGGCCTCG- 176
Query 196 G-TGATGCTAATGGTG-GAACGAAT-GACATCCCTCCCACACGAACCTAAGATG-TCGTG 251
| ||||| | ||||| || ||||| | || |||| |||| ||||||| ||||| | |||
Sbjct 177 GCTGATGTTCATGGTCCGA-CGAATTG-CAACCCTACCACCCGAACCTGAGATGGT-GTG 233
Query 252 GTTTCACGATGTTTATG-AA-GAGCAAAGACGTAA-CCCTGGCTCAGG-CGAA-TATGAG 306
|||||| | | ||| || || ||| ||||| ||| ||| ||| || |||| | ||||
Sbjct 234 GTTTCA-G-TCTTTTTGTAAAGAGGAAAGATGTATTCCC-GGC-CAACTCGAAGT-TGAG 288
Query 307 GTGTTGTTTCACTCTGTTTATCAAGAGAAGAAACCATCTTTGTCCTCTGGTCAACAACAG 366
| ||||||||||||||||||||||| |||| ||| | ||| || ||||||||||| |||
Sbjct 289 TTCTTGTTTCACTCTGTTTATCAAGAAAAGATACCGTATTTTTCATCTGGTCAACAGCAG 348
Query 367 TTACGTATTCCTTTTGAGA-AAGTCGGTTC-TAATATTTCTCAACCTATACG-AGGTTTG 423
|| ||| ||||| | | | || | | | | | |||||||||| || || |||||||
Sbjct 349 TTGCGTGTTCCTCCTAATACAAA-CTATACGTC-TGTTTCTCAACCCAT-CGGAGGTTTG 405
Query 424 A-CATGTCTTCATTTAGATACTAAGGTTGCGATTTGCAATCCCGGTACCAAAAATTATCG 482
| | |||||||| | ||| |||||| ||||| |||||||||| ||||| ||||| | |||
Sbjct 406 ATC-TGTCTTCAGTCAGAAACTAAGTTTGCGCTTTGCAATCCGGGTACGAAAAAGTCTCG 464
Query 483 TATTTTACCGGAGATCCCAGCACTTGAAGATGAAGAGTGGCGCGAATCTTCCATAA-AAT 541
|||||| || |||| ||||| |||| | ||| | | || |||| ||
Sbjct 465 GGCTTTACCTGATATCCAAGCACATGAA-A--AAGC-T--------T-TT--ATAACAA- 508
Query 542 GtttttttGGATACGATGAAGATACGAATGTATTCAAGGTGTTGTGTATTAA-GACG--A 598
||||||| ||||||||||||| |||||| |||||||||||||| ||| || | || | |
Sbjct 509 GTTTTTTAGGATACGATGAAGCTACGAACGTATTCAAGGTGTTATGT-TTGACGATGGTA 567
Query 599 -GGAACC-TGT-CC-TCTATACCAATTAACGATTGTCATGTCTTGACGGTGGAATTGGGT 654
|| || || || || | || | || | || | ||| |||||||||||||||| |||
Sbjct 568 TGGGCCCATGAACCATCAAAACGAGTTTATGAGTATCAAGTCTTGACGGTGGAATCCGGT 627
Query 655 GCAGAACCTTCTTATTGGAGACGGATCATATGTAATGAT--G-ATCATTCACCAGTTACT 711
| ||| ||| || ||||||| |||||| |||||| || | |||| |||||| |||
Sbjct 628 GTAGAGTCTTGTTCTTGGAGAGGGATCACATGTAAGGAGAAGGATCACACACCAGAAACT 687
Query 712 GAAGCACTATTTAAAGGAGGT-TTCTTGTACTATGGAGCTTGGTCTAGTACTGGCAA-CA 769
||| ||||| ||||||||| || ||||||||||||||| |||| | || || | | |
Sbjct 688 CAAGGACTATGTAAAGGAGGGGTT-TTGTACTATGGAGCTCGGTCCACTAGTGACCATCG 746
Query 770 AT-T-TGGTAGTGAGGTTCAACGTGACGTCTGAAGAGTTTACCGT--TTGGGAACCGTC- 824
| | ||||| |||| || || |||| |||| |||||||||||| ||| ||| ||
Sbjct 747 ACCTCTGGTAATGAGCTTTAATGTGAGGTCTCAAGAGTTTACCGCCATTG--AACT-TCC 803
Query 825 TGAAGAGGTTCAACGTGATGCTGATTTCAGTT-TTCCACGTTGGAAATTCGTGATTTACG 883
||| | |||| | | | ||| |||| || |||||| || |||||||||
Sbjct 804 TGA-----T-CAAC-T-ACA-T-ATT--AGTTATTT----TTGGAATTTTGTGATTTACA 847
Query 884 A-GAAAGACATTGCCCTAGTAGAT-GACTTTG-CTTTTTTCCCT-GCTGCTGAGATTGAT 939
| | || |||||| |||| || || | || |||| |||| | | || || |||
Sbjct 848 ATGGG-GATATTGCCTTAGT-GAACGAATCTGACTTTGA-CCCTAGA-GTTGTGAATGAA 903
Query 940 CGGGATGGGACTAACGTTTTCC-CTATATTGGTTATAGATGAAATTTCAGGAGACTTTG- 997
| | |||||| ||| ||||| | | |||| ||||| |||| || | || ||| | |
Sbjct 904 CCGAATGGGAATAAAGTTTTTCAC-ATATGGGTTAGGGATGCAACTGCACAAGAATG-GC 961
Query 998 AGAGAAAAATCATCAAGATTCATGGTTGGCAACAAAAAGTTGGAGATGATGTATTTTATT 1057
|||||| |||| |||||| | ||||| ||||||| |||||| ||| || | | | ||
Sbjct 962 AGAGAACCCGCATCGAGATTCCTCGTTGGGAACAAAATGTTGGACATG-TGGACTATGTT 1020
Query 1058 T-CAAAGGTACCATTGGAACAGGAGAACTTGTTTTCGCACAA 1098
| || |||||||| ||||||| ||||||||||||||| |||
Sbjct 1021 TTCAGAGGTACCACTGGAACAAAAGAACTTGTTTTCGCCCAA 1062
> AT1G70390.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:26529171-26530282 REVERSE LENGTH=999
Length=999
Score = 167 bits (90), Expect = 3e-40
Identities = 146/173 (84%), Gaps = 4/173 (2%)
Strand=Plus/Plus
Query 28 AATTCAAATTCCCAAACCCCTCCTGAAGATCTAGAAAAGAAGATTCTT-TTACGGTTGCC 86
|||||||||| | |||| | ||||||||||||| ||||| ||||| || ||| ||||| |
Sbjct 7 AATTCAAATTTCGAAACACTTCCTGAAGATCTACAAAAGGAGATT-TTGTTATGGTTGTC 65
Query 87 TCTGAAATCCTTGGTGAAACTCATCCAAGTCTCAAAGAAATGGGCATCTATTATCCGTGG 146
|| ||||||||||||||| ||| || |||||||||||||| |||||||||||||||||
Sbjct 66 TCCAAAATCCTTGGTGAAATTCACCCTCGTCTCAAAGAAATGTGCATCTATTATCCGTGG 125
Query 147 GGAAGAATTCAGA-CGTGAGTACTTGCTCCGATCAATGACAAGACCTCGAGTG 198
||||||||||| | | | ||| ||| ||||||||||||||| ||||| |||
Sbjct 126 GGAAGAATTCAAAGC-TCTTTACATGCGCCGATCAATGACAAGGCCTCGTGTG 177
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1055 ATTTCAAAGGTACCATTGGAACAGGAGAACTTGTTTTC 1092
||||||||||||||||||||||||||||||||||||||
Sbjct 785 ATTTCAAAGGTACCATTGGAACAGGAGAACTTGTTTTC 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5