BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926439
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70960.1 | Symbols: | F-box and associated interaction doma... 555 2e-157
AT1G71290.1 | Symbols: | F-box associated ubiquitination effec... 296 2e-79
> AT1G70960.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:26756253-26757362 FORWARD LENGTH=1110
Length=1110
Score = 555 bits (300), Expect = 2e-157
Identities = 473/554 (85%), Gaps = 22/554 (4%)
Strand=Plus/Plus
Query 93 GAAGTAACAAAGGAATATCAGGTATACACGATGACATCGGATGAAGAATCTTCTTCTTGG 152
||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 517 GAAGTAAGTAAGGAATATCTTGTATACACGATGGGATCGGATGAAGAATCTTCTTCTTGG 576
Query 153 AGACCGATCATATGTAAGCATGACCATGCACCAGTTACTGAAGGACTATGTAAAGGAGGA 212
|| | ||||| |||| |||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 577 AGGCTGATCACATGTGAGCATGACCATGCACCAGTTACCGAAGGACTTTTTAAAGGAGGA 636
Query 213 GTTTTGTACTATGGAGCTAAGTCCAATAGTGACAAATCTGTGGTAATGAGCTTCAACGTG 272
|| ||||||||||||||||| ||||||| || |||||| |||||||||||||||||||||
Sbjct 637 GTGTTGTACTATGGAGCTAAATCCAATAATGGCAAATCAGTGGTAATGAGCTTCAACGTG 696
Query 273 AGTTCTGAAGATTTTAGTGTCATTGAGTTGCCTAAGGAAGTCGAACTTATTCATCATTGG 332
| ||||||||||||||||||||||||| | | |||||||||| ||| || | |||||
Sbjct 697 AATTCTGAAGATTTTAGTGTCATTGAG-T---T--GGAAGTCGAAATTAGTCCTTATTGG 750
Query 333 AGATTGGTGAATTACAAAGGGGATATCGCCTTAATGCACTACGGTGAGTACTATAGATTG 392
||||||||||||||||| |||||||| ||| ||||| || || |||| |||| |||
Sbjct 751 AGATTGGTGAATTACAAGGGGGATATTGCCCTAATGAACAACATTGAG---GATAGCTTG 807
Query 393 -ACCCGCAGTGGAGTAA-CTGACATGTGGGTTAGGAACGAGGTTGA-TGGAAATTGGGAG 449
| | |||| ||| || ||| ||||||||||||||||||||| | ||||||||||||
Sbjct 808 TA-TCACAGTCGAG-AATTTGAAATGTGGGTTAGGAACGAGGTT-ACTGGAAATTGGGAC 864
Query 450 AGAAAC-AGCATTAAGATTTCTCATTGGAAAGAAACTTTTGATAATAAGGA-GTTTCATT 507
|| ||| ||||||||||||||||||||||| | |||| ||||| ||| || |||| |||
Sbjct 865 AG-AACTAGCATTAAGATTTCTCATTGGAATGGAACTGTTGATGGTAA-GACGTTTTATT 922
Query 508 TCAAAGCTACCATTGGAACAAAAGAACTTGCTTTCGCACCACACCCATTGGATTGGGGAA 567
|||||| ||| |||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 923 TCAAAGGTACTATTGGAACAAAAGAACTTGCTTTCGCACCAGACT-ATTGGTTTGGGGAA 981
Query 568 CAAC-TCTTTGTGTTGTTTTCCGATGCAGACGCAACGAACTTCAGAAGATTTGAGATTGA 626
|||| | ||||||| || || |||| |||| ||| |||| ||||||||||||| |||||
Sbjct 982 CAACAT-TTTGTGTCGTATTACGATACAGAAACAAAGAACCTCAGAAGATTTGATATTGA 1040
Query 627 AAGAATGGTTGATC 640
| ||||||||||||
Sbjct 1041 AGGAATGGTTGATC 1054
> AT1G71290.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:26872643-26873242 FORWARD LENGTH=600
Length=600
Score = 296 bits (160), Expect = 2e-79
Identities = 415/529 (78%), Gaps = 53/529 (10%)
Strand=Plus/Plus
Query 134 TGAAGAATCTTCTTCTTGGAGACCGATCATATGTAAGCATGACCATGCACCAGTTACTGA 193
|||||||||| |||||||||| ||||| |||||||||||| ||| |||||||||||||
Sbjct 18 TGAAGAATCTAATTCTTGGAGAGTGATCACATGTAAGCATGATCATTCACCAGTTACTGA 77
Query 194 AGGACTATGTAAAGGAGGAGTT-TTGTACTATGGAGCT-A--AGTCCAATAGTGACAAAT 249
|||||||||||||||||| || ||||| ||||||||| | ||||||||||||||||||
Sbjct 78 AGGACTATGTAAAGGAGGT-TTCTTGTATTATGGAGCTGATGAGTCCAATAGTGACAAAT 136
Query 250 CTGTGGTAATGAGCTTCAACGTGAGTTCTGAAGATTTTAGTGTCATTGAGTTGCCTAAGG 309
|||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||| |||
Sbjct 137 CTGTGGTAGTGAGCTTCAACGTGAGTTCTGAAGAGTTTAGCGTCATTGAATTGCCTGAGG 196
Query 310 AAGTCGA-ACTT-ATTCATCATTGGAGATTGGTGAATTACAAAGGGGATA-TCGCCTTAA 366
||||| | | || || |||| ||||||||||||||| ||||| ||||| | | ||||||
Sbjct 197 AAGTCAAGA-TTGAT-CATCGTTGGAGATTGGTGAACTACAATGGGGA-AGTTGCCTTAG 253
Query 367 T-GCACT-ACGGTGAGT---ACTATAG-ATTG--AC----CCGCA-G----TGGAGTAAC 409
| | | | || ||||| ||| | | |||| | ||| | | |||||||
Sbjct 254 TAG-A-TGACTCTGAGTTTGACTTTGGTATTGTGAAAGAACCGAATGGCAATGGAGTATT 311
Query 410 TGACAT-GTGGGTTAGGAACGAGGTTGATGGAAATTGG-GAGAGAAACAGCATTAAGATT 467
||| || |||||| |||||||| |||||||| |||| | ||||||| ||||| |||||
Sbjct 312 TGA-ATTGTGGGTAAGGAACGAAACTGATGGAACTTGGTG-GAGAAACTGCATTGAGATT 369
Query 468 TCTCATTGGAAAGAAACTT-TTG-ATAATAAGGAGTTTCAT-TTCAAAGCTACCATTGGA 524
|||||||| || || | | ||| | |||| ||||||| | ||||||| ||||||||||
Sbjct 370 CCTCATTGGGAACAA-CATGTTGGA-AATATGGAGTTTT-TCTTCAAAGGTACCATTGGA 426
Query 525 ACAAAAGAACTTGCT-TTCGCACCACACCCAT-TGGATTGGG-GAACAACTCTTTGTGTT 581
|| |||||||| | ||||| | | || | | || |||| | || || ||| |||| |
Sbjct 427 ACTGGAGAACTTG-TGTTCGCTCAAGACTC-TGTG-ATTGAGAGATCAT-TCTATGTGGT 482
Query 582 GTT-TTCCGATGCAGACGCAACGAACT-TCAGAAGATTTGA-GATTGAA 627
|| || ||| ||| | || | || | ||||||||||| | |||||||
Sbjct 483 -TTATTATGATACAGTCACA-CAAAATCTCAGAAGATTT-ACGATTGAA 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5