BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926445

Length=635
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71015.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   990    0.0  


> AT1G71015.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G01340.1); 
Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26789236-26790160 
REVERSE LENGTH=840
Length=840

 Score =  990 bits (536),  Expect = 0.0
 Identities = 604/636 (95%), Gaps = 8/636 (1%)
 Strand=Plus/Plus

Query  1    ACAAAACATCATTCACCAAAATGGGTAATAGCTTGGTAAGCAAGAAAACTGCGAAAATCA  60
            ||| ||||||||||||||||||||| |||||||||| || ||||||||| |||| |||||
Sbjct  80   ACACAACATCATTCACCAAAATGGGAAATAGCTTGGGAACCAAGAAAACAGCGACAATCA  139

Query  61   TGAACATCAATGGCGAGAGTTTCAAGCTGAAAACGCCGGTGAAAGCTGGTACAGTGGTTA  120
            ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct  140  TGAACATCAATGGCGAGAGTTTCAAACTGAAAACGCCTGTGGAAGCTGGTACAGTGGTTA  199

Query  121  AAGATTTTCCGGGCCATATTCTCTTGGAATCCGAAGCAGTGAAGCGATTT-GGGATCAGA  179
            |||||||||| |||||  |||||||||||||||||||||||||||| ||| || ||||||
Sbjct  200  AAGATTTTCCAGGCCACGTTCTCTTGGAATCCGAAGCAGTGAAGCG-TTTAGGAATCAGA  258

Query  180  GCAAAGCCCTTAGAGCCACACCAAAACTTGGAATCCAAAAGGCTTTACTTCATGGTGGAA  239
            ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct  259  GCAAAGCCCTTGGAGCCTCACCAAAACTTGGAATCCAAAAGGATTTACTTCATGGTTGAA  318

Query  240  CTTCCAAGAACATGGAAAGAGAGAACCCCAAGAAGGGTTCGGTCGGGAATCCAGATGAGT  299
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  319  CTTCCAAGAACATGGAAAGAGAGAACTCCAAGAAGGGTTCGGTCGGGAATCCAGATGAGT  378

Query  300  GCGAAGGAGAGACTAGAAAATCTGAAGCTGTCTCGTAGATCATCATCTGATCTCTCGGTA  359
            |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  379  GCGAAGGAGAGATTAGAGAATCTGAAGCTGTCTCGTAGATCATCATCTGATCTCTCGGTA  438

Query  360  ATGAAGAAGAAGACAGAGGAGGTTGATGATGAAGAGAGAGAAGTGAGTAGCGTGAAGTTG  419
            ||||||||||||||  | |||||| |||||||||||||||||||||||||||||||||||
Sbjct  439  ATGAAGAAGAAGAC--A-GAGGTTAATGATGAAGAGAGAGAAGTGAGTAGCGTGAAGTTG  495

Query  420  AAGTTACCAAAGTGGAAAATTGAAAAACTGAGGAAAGAGAGTGAGAGTGGCTCTGATTTC  479
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  496  AAGTTACCAAAGTGGAAAATTGAGAAACTGAGGAAAGAGAGTGAGAGTGGCTCTGATTTC  555

Query  480  TCCAACAAGATCACACAACTTTGTCTCCTTCACATACCAAGTGGTTTGATTCATCAAAGA  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  556  TCCAACAAGATCACACAACTTTGTCTCCTTCACATACCAAGTGGTTTGATTCATCAAAGA  615

Query  540  CAACAACATTTGCTTCGTAATGGAGGAAGAAACTTTGGGATTGAAGAAAAAGAAGAAGGT  599
            |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  616  CAACA---TTTGCTTCGTAATGGAGGAAGAAACTTTGGGATTGAAGAAAAAGAAGAAGGT  672

Query  600  GCCAAAATCACATGAGGTGATCAATATTTTTTAAGG  635
            |||||||||||||||||||||||||| |||| ||||
Sbjct  673  GCCAAAATCACATGAGGTGATCAATACTTTTGAAGG  708



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30642829670


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5