BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg926449

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71050.1 | Symbols: HIPP20 | Heavy metal transport/detoxific...   784    0.0  


> AT1G71050.1 | Symbols: HIPP20 | Heavy metal transport/detoxification 
superfamily protein  | chr1:26803153-26804292 REVERSE 
LENGTH=974
Length=974

 Score =  784 bits (424),  Expect = 0.0
 Identities = 476/501 (95%), Gaps = 3/501 (1%)
 Strand=Plus/Plus

Query  1    TCTTGGTGAGAGTAGTAGACATGGGTGCTCTTGATTCTCTTTCCGAGTATATCTCCGACT  60
            |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  327  TCTTGGTGAGAGTAATAGACATGGGAGCTCTTGATTCTCTTTCCGAGTATATCTCCGACT  386

Query  61   ACTTCCGCGTCTCCAGAAATAGGAGGAAGCGTAAAGTCATGCAGACGGTGAATATAAAGG  120
            ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  387  ACTTCCGCGTCACCAGAAAAAGGAGGAAGCGGAAAGTCATGCAGACGGTGAATATAAAGG  446

Query  121  TGAAAATGGACTGCGATGGTTGTGAACGCAGAGTCAAGAACGCGGTTTCCTCCATGAAAG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  447  TGAAAATGGACTGCGATGGTTGTGAACGCAGAGTCAAGAACGCGGTTTCCTCCATGAAAG  506

Query  181  GGGTGAGATCGGTGGAGGTGAACAGAAAGATACACAAAGTGACGGTGAGTGGATACGTGG  240
            | |||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  507  GTGTGAAATCGGTGGAGGTGAATAGAAAGATACATAAAGTGACGGTGAGTGGATACGTGG  566

Query  241  AACCGAAGAAGGTGTTAAAGAGAGTCGAAAGGACAGGGAAAAAGGCGGAGATATGGCCGT  300
            |||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct  567  AACCAAAGAAGGTATTAAAGAGAATCGAAAGGACAGGGAAAAAAGCGGAGATATGGCCGT  626

Query  301  ACGTTCCCTACAACATGGTCGCATATCCATACGCAGTCGGAACTTACGACAAAAAAGCTC  360
            ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  627  ACGTTCCTTACAACATGGTCGCATATCCATACGCGGTCGGAACTTACGACAAAAAAGCTC  686

Query  361  CTGCCGGTTATGTCAGGAAATCTGAGCAGTCGCAGTTGCAGCTATTGCCGGGAGCTCCCG  420
            | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  687  CGGCCGGTTATGTCAGGAAATCTGAGCAGTCGCAGTTGCAGCTGTTGCCGGGAGCTCCCG  746

Query  421  ACGA-CAACTTCGTTTCTCTTTTTAGCGACGAGAATCCCAACGCTTGTACCGTTATGTAA  479
            | || | ||| | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  747  A-GAACCACTACATTTCTCTTTTTAGCGACGAGAATCCCAACGCTTGCACCGTTATGTAA  805

Query  480  TAA-TAGTTTACTCTAGTAGT  499
            ||| || ||||||||||||||
Sbjct  806  TAAATAATTTACTCTAGTAGT  826



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23810985678


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5