BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg926455
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G71100.1 | Symbols: RSW10 | Ribose 5-phosphate isomerase, ty... 1321 0.0
> AT1G71100.1 | Symbols: RSW10 | Ribose 5-phosphate isomerase,
type A protein | chr1:26814632-26815671 FORWARD LENGTH=1040
Length=1040
Score = 1321 bits (715), Expect = 0.0
Identities = 803/845 (95%), Gaps = 8/845 (1%)
Strand=Plus/Plus
Query 1 TCACAAAGCAAGCCGCGTACAATGGGTTCTGCTTTCGATCCCTTTGTCACGGCCACTGAG 60
|||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 74 TCACAAAGCAAGTCGCGTACAATGGGTTCTGCATTCGATCCCCTTGTCACGGCCACTGAG 133
Query 61 GATTC-CGCCGTCGTCAACTCGCCGGCGCCTCTCTCAAACCTCA-GTCAAGAAGAACTCA 118
|| || ||||| |||||||||| || |||| ||||||||||||| | |||||||||||||
Sbjct 134 GA-TCTCGCCGCCGTCAACTCGGCGCCGCCACTCTCAAACCTCACG-CAAGAAGAACTCA 191
Query 119 AGAAAATCGCCGCTTATAAAGCCGTCGAATTCGTCGAATCTGGAATGGTCATCGGTCTCG 178
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 192 AGAAAATCGCCGCTTATAAAGCCGTCGAATTCGTCGAATCTGGAATGGTTATCGGTCTCG 251
Query 179 GCACTGGCTCCACCGCTAAACACGCCGTGGCTCGTATCAGCGAGCTTCTCCAAGAAGGAA 238
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 252 GCACTGGCTCCACCGCGAAACACGCCGTGGCTCGTATCAGCGAGCTTCTCCGAGAAGGAA 311
Query 239 AACTCAAGGATATAATCGGAATCCCGACTTCAACCACAACGCATGAGCAAGCGGTGTCTC 298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 312 AACTCAAGGATATAATCGGAATCCCTACTTCAACCACAACGCATGAGCAAGCGGTGTCTC 371
Query 299 TAGGGATACCGTTATCCGATCTAGATTCGCATCCGGTGGTGGATCTATCAATCGATGGCG 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TAGGGATACCATTATCCGATCTAGATTCGCATCCGGTGGTGGATCTATCAATCGATGGCG 431
Query 359 CCGACGAAGTCGATCCGGCTCTCAATCTGGTGAAAGGACGCGGCGGATCGTTATTGAGGG 418
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 432 CCGACGAAGTCGATCCGGCTCTTAATCTGGTGAAAGGACGCGGCGGATCGTTATTGAGAG 491
Query 419 AGAAGATGATAGAAGGAGCATCTAAAAAGTTCGTTGTGATTGTTGATGAATCGAAGCTTG 478
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 492 AGAAGATGATTGAAGGAGCATCTAAGAAGTTCGTTGTGATTGTTGATGAATCGAAGCTTG 551
Query 479 TGAAGTATATCGGAGGAAGCGGACTCGCTGTTCCGGTGGAGGTTGTTCCGTTCTGCTGCG 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 TCAAGTATATCGGAGGAAGCGGACTCGCTGTTCCGGTGGAGGTTGTTCCGTTCTGCTGCG 611
Query 539 ATTTCACACGGGGGAAATTGGAAGAGCT-TTTCAGAGAATCGGGATGCGTTGCGAAGCTT 597
|||||||| |||||||| |||||||||| ||| ||||| |||||||| |||||||||||
Sbjct 612 ATTTCACAAGGGGGAAACTGGAAGAGCTATTT-AGAGATTCGGGATGTGTTGCGAAGCTG 670
Query 598 AGGATGAAGATCGGATCTAACGGCGGAGATGCGACGCCGGCTGTGACGGATAAT-GGAAA 656
|||||||| |||||||||||||||| ||| ||| |||||||||||||||||||| ||||
Sbjct 671 AGGATGAAAATCGGATCTAACGGCGAAGAGGCGGCGCCGGCTGTGACGGATAATAGGAA- 729
Query 657 TTATGTGGTGGATTTGTATTTGGAGAGAGATATTGGAGATTTAGAGGCGGCGAGTGAGAA 716
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 730 TTATGTGGTGGATTTGTATTTGGAGAGAGATATTGGAGATTTAGAGGTGGCGAGTGAGGC 789
Query 717 GATATTGAGGTTTCCTGGAGTAGTGGAGCATGGGATGTTTCTGGGAATGGCGACGACGTT 776
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 790 GATATTGAGGTTTCCTGGAGTAGTGGAGCATGGGATGTTTCTGGGAATGGCGACTACGTT 849
Query 777 GATCGTCGCCGGGAAATTCGGTGTAACCGTCAAGGATAGGTTTGGATAAAAGAGTCATTT 836
|||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 850 GATCGTCGCCGGCAAATTTGGTGTTACCGTCAAGGATAGGTTTGGATAAAAGTGTCATTT 909
Query 837 GAAAA 841
|||||
Sbjct 910 GAAAA 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5